PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027153390.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 739aa    MW: 81371.8 Da    PI: 5.5855
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027153390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.21.6e-1313747381374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++f+eAL arla   + + + +a +p +  + ns e l++++++++++P++kf
  XP_027153390.1 374 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFAEALGARLAAtlTAKPTTAASRPFNPFPPNSLEILKIYQILYQACPYIKF 468
                     68****************************************************943333344444444444567******************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A++l++pfef++ v ++led
  XP_027153390.1 469 AHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----YPEAVRETGRCLTELAHSLHIPFEFHP-VGEQLED 558
                     ********************************************************....9**************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l++++L+ + gEalaVn+v +lh ++    sl     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+
  XP_027153390.1 559 LKPHMLNRRVGEALAVNSVNRLHWVP--GNSLG----NLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRA 647
                     *************************9..44555....5********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     kvE+ ++++ei+n+va eg+er+ rhe+lekWr+ +e  G++ v ls +a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v++SaWr
  XP_027153390.1 648 KVEQYIFAPEIRNIVAEEGRERVRRHERLEKWRKIMEGKGYRGVGLSANAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWR 738
                     ******************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    
MINSLCGSME SLKSEVGNLR TCDAGSFKKE TADPTIMEGL VSRSDNSCAT KLRPSSPNES  60
AVSESRKTPT PPSSQYDHAS GTSLVPPSLK FPALKLQPDQ DVEIQSPDRC LWEFFADQLE  120
GDFMISSPVR IAPSSSPAPQ AASGYQNTTT THDIINNNSS SYNFSHAQAQ AMHGLSLMVC  180
SPSPPRMSSP LGPYNRDKGK GLSPLHRVLN SPNHEYMQVE SLSLPALEFL DDLDKDDDDF  240
GGSYSNSCKG PDIAGISSSD CFDLSSVPEL LECLTMPNPA ASSRFCASMA DTEDNDTSTT  300
TSSIYQFSSS GESAPLLQQL QQERQQEKQQ QLGSISHRPN HQPPPPVEMN LNSSLMVQPL  360
SIGPEQEQDS GLRLVHLLLA CAEAVAKEDY MLARRYLHHL NRVVTPLGDS MQRVASCFAE  420
ALGARLAATL TAKPTTAASR PFNPFPPNSL EILKIYQILY QACPYIKFAH FTANQAIFEA  480
FEAEERVHVI DLDILQGYQW PAFMQALAAR PGGAPFLRIT GVGPYPEAVR ETGRCLTELA  540
HSLHIPFEFH PVGEQLEDLK PHMLNRRVGE ALAVNSVNRL HWVPGNSLGN LLGMIRDQAP  600
NIVTIVEQEA SHNGPYFLGR FLEALHYYSA IFDSLDATFP AESAQRAKVE QYIFAPEIRN  660
IVAEEGRERV RRHERLEKWR KIMEGKGYRG VGLSANAVTQ SKILLGLYSC EGYRLTEDKG  720
CLLLGWQDRA IVAASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-89GRAS family protein