PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027153368.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 284aa    MW: 30671.1 Da    PI: 6.6824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027153368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11167214455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_027153368.1 167 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 214
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDPQASYNLG CDTAAYNLAE IWPFPMNNGP GPGPGASAAT SFHNTNDFVA TMSMNMNVNS  60
GVNRDRDPMV MEQAPNPTPN SSGGGGARRR RDEDEAVKGV SNSSNGNAMK ACDSKKLKTA  120
GAHENREAEA EGEANSGKAA EPSPKPAEPP KQDYIHVRAR RGQATDSHSL AERARREKIS  180
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR LSPGIEGFPS  240
KDFGQQPFDS SGMAFASQAV REYARGTSPD WLHMQIGGGF ERSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188118RRRRDEDEAVKGVSNSSNGNAMKACDSKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-79bHLH family protein