PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152792.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 407aa MW: 44235.8 Da PI: 7.0937

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.6	5.7e-31	63	186	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRRvRls+++a +++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s+ + + + +++++ g XP_027152792.1 63 FGGKDRHSKVCTVRGLRDRRVRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPPGSFNHSFQPVWGTHHPGVGahqvtkdq 157 689*************************************************************7777755444444444444444443344444 PP TCP 89 .............kaaksaakskksqksa 104 ++ +s+++++k+ +s+ XP_027152792.1 158 glrigasinwgdhDHHPSEPSGSKTWDSD 186 45555555555553333333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS 60 RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI 120 DELPPLQMPP GSFNHSFQPV WGTHHPGVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS 180 KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF 240 SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL 300 PSTMSVPSGG PQVLVYQPAS SITQSYFPSH IAPAVTVDYA QKQIEFQMLN SATENPLTNS 360 LAPPVSDSTS QHAAGRPFRI LSATTNLLPS QNDRESKQDL DNDFSSR

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS  60
RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI  120
DELPPLQMPP GSFNHSFQPV WGTHHPGVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS  180
KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF  240
SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL  300
PSTMSVPSGG PQVLVYQPAS SITQSYFPSH IAPAVTVDYA QKQIEFQMLN SATENPLTNS  360
LAPPVSDSTS QHAAGRPFRI LSATTNLLPS QNDRESKQDL DNDFSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	7e-44	TCP family protein