PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152534.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 403aa MW: 45169.7 Da PI: 7.6304

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.3	9.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHH.HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavk.qlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++ q+G g+W++ +++ g+ R++k+c++rw +yl XP_027152534.1 14 KGTWTPEEDQKLLSYIEqQHGHGSWRALPAKAGLERCGKSCRLRWTNYL 62 799***********7369999**********************97 PP
2	Myb_DNA-binding	54.3	3e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_027152534.1 68 RGKFSSQEDQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHGSWRA LPAKAGLERC GKSCRLRWTN 60 YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM 120 GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL 180 SPPASAQLPL AKALVSPLVT PLEPMVPMVQ KHYFHCLDIL KAWQRTWTTT KNANGFFSTA 240 IGSLQSPTST LHFSDNTFAM SSAARLTGEN LPFNSTINCE ARDMKETGTS TWQYLDTPKN 300 NDPLEVTGEK MESTTGNMMQ LNHDVNVQCD FDPVGGAYTM EFSLRSPGFM EGFADADIDD 360 SNNNPTGSYQ SLGYRSGGDL EDNQKYWNNI VNEEISALGS PFF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHGSWRA LPAKAGLERC GKSCRLRWTN  60
YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM  120
GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL  180
SPPASAQLPL AKALVSPLVT PLEPMVPMVQ KHYFHCLDIL KAWQRTWTTT KNANGFFSTA  240
IGSLQSPTST LHFSDNTFAM SSAARLTGEN LPFNSTINCE ARDMKETGTS TWQYLDTPKN  300
NDPLEVTGEK MESTTGNMMQ LNHDVNVQCD FDPVGGAYTM EFSLRSPGFM EGFADADIDD  360
SNNNPTGSYQ SLGYRSGGDL EDNQKYWNNI VNEEISALGS PFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	5e-99	MYB family protein