PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152488.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 265aa MW: 29335.8 Da PI: 6.9036

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	151	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq XP_027152488.1 151 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 198 8*************************8....355888889999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDVVNSLTEI DSFNPNVQEL LSLTTHVGFS DHNRQQSQIP FSFSNDTSHN PNANHHHHLQ 60 VPLDFESAAQ FFPQGGVPIS HGCNDSNSLS EPDYLANSSS RGSASAGIPV NKPKGTYNYG 120 EKKRKRSNGK ETEKPKEVVH VRAKRGQATD SHSLAERMRR EKINQKLRCL QDLVPGCYKS 180 MGMAVMLDVI INYVRSLQNQ IDFLSMKLSA ASLFYDFNSL DMDAVPPTQA CANFPGPPGC 240 EAQGLEKMVG EGYGELPQFH TSWPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	4e-57	bHLH family protein