PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152479.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 666aa MW: 74348.3 Da PI: 5.7456

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62	1.2e-19	249	303	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +prl+WtpeLHe F++a++ L G+ A P +i + m+++ L+ h++SHLQk+R + XP_027152479.1 249 QPRLVWTPELHEIFLNAIAAL-GERDAHPTAIQKEMDIPELSHRHIASHLQKHRKH 303 59*****************.9999**************************75 PP
2	Myb_DNA-binding	36.1	1.5e-11	251	301	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+e++e++++a++ lG + ++++I ++m ++ ++ s++qk++ XP_027152479.1 251 RLVWTPELHEIFLNAIAALGERdaHPTAIQKEMDiPELSHRHIASHLQKHR 301 789******************************99**********97 PP
3	Response_reg	65.3	2.9e-22	20	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vdD+ + + ++ ++l+++ y ev++++ + al l+++++ +Dl+++ ++mpg G+++l +i ++++p+i+++++ + ++a++al+ G XP_027152479.1 20 ILLVDDDTDCLANMSSVLREHSY-EVTTTKWAIIALSLIRQRRsfFDLVITEMDMPGFGGFTMLNQILLIKKDIPVILMSSNRDADMAKKALDEG 113 89*******************.***********99999*******************9999******************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a f++Kp++ +l++ XP_027152479.1 114 ACFFFFKPVHTPDLIT 129 *******9999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MDVSSPGGGL IPKAAKGLQI LLVDDDTDCL ANMSSVLREH SYEVTTTKWA IIALSLIRQR 60 RSFFDLVITE MDMPGFGGFT MLNQILLIKK DIPVILMSSN RDADMAKKAL DEGACFFFFK 120 PVHTPDLITV WQHVFRKRGN RKGLLKEVED NGDRTVQTER PSGVNEENVA DQPLIRDPRK 180 GKAPCSDDGH GSKRPKNVGD DARQANKDKL IIGGNDKQAR DKDVGKRKKM EKRKKRKYRK 240 KSSRSAEKQP RLVWTPELHE IFLNAIAALG ERDAHPTAIQ KEMDIPELSH RHIASHLQKH 300 RKHINKAREV LVRNPPIFEP NVSRYPSLSE RKKPSFFESN MTRYLTPQPT TMRTRKVPSI 360 FDTLMGTNPT EHSQSPYTPS FAPSQFTHPK TYLSEGTAYN QMDALNQLLA NPSNNPPMTS 420 NHQNSYANFG NQESSQLNHV QYSADQGKGK QVLSSFGGYN DNHVAPADDL CKTNVDALIE 480 AIKKELADAL GADANLRQDM KFLARYNNVV PQQSSHQTPS EVFSAACKDL LAPAETDFDI 540 GEQMTYTYKD LAMILNDLNA GSEGISGSSS DQEPPMEFST ACEDLAPAET DFDIGEQMTY 600 RFEDVAMILD DSSVGNGDKT GSSSESPDPP LPDNVADDDH DFTERLNIED FSELFEIFPD 660 IQDGAP

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MDVSSPGGGL IPKAAKGLQI LLVDDDTDCL ANMSSVLREH SYEVTTTKWA IIALSLIRQR  60
RSFFDLVITE MDMPGFGGFT MLNQILLIKK DIPVILMSSN RDADMAKKAL DEGACFFFFK  120
PVHTPDLITV WQHVFRKRGN RKGLLKEVED NGDRTVQTER PSGVNEENVA DQPLIRDPRK  180
GKAPCSDDGH GSKRPKNVGD DARQANKDKL IIGGNDKQAR DKDVGKRKKM EKRKKRKYRK  240
KSSRSAEKQP RLVWTPELHE IFLNAIAALG ERDAHPTAIQ KEMDIPELSH RHIASHLQKH  300
RKHINKAREV LVRNPPIFEP NVSRYPSLSE RKKPSFFESN MTRYLTPQPT TMRTRKVPSI  360
FDTLMGTNPT EHSQSPYTPS FAPSQFTHPK TYLSEGTAYN QMDALNQLLA NPSNNPPMTS  420
NHQNSYANFG NQESSQLNHV QYSADQGKGK QVLSSFGGYN DNHVAPADDL CKTNVDALIE  480
AIKKELADAL GADANLRQDM KFLARYNNVV PQQSSHQTPS EVFSAACKDL LAPAETDFDI  540
GEQMTYTYKD LAMILNDLNA GSEGISGSSS DQEPPMEFST ACEDLAPAET DFDIGEQMTY  600
RFEDVAMILD DSSVGNGDKT GSSSESPDPP LPDNVADDDH DFTERLNIED FSELFEIFPD  660
IQDGAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	229	RDKDVGKRKK
2	232	240	KRKKRKYRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	9e-37	ARR-B family protein