PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027151553.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 270aa    MW: 30261.1 Da    PI: 9.5651
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027151553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly214.78.9e-67932301138
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaal+v+++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+ e+++l++l++k+sceffhdp++++s+eG+vrk+lk
  XP_027151553.1  93 SVYKGKAALTVEPRPPEFTPLDSGAFKLTKEGFVLLQFAPAASVRQYDWSRKQVFSLSVNEIGSLISLGAKDSCEFFHDPFKGKSDEGRVRKVLK 187
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     vePlpdGsG+f+nlsv+n+l++++e++++P++kaefavl s +
  XP_027151553.1 188 VEPLPDGSGHFFNLSVQNKLINVDENIYIPITKAEFAVLTSGF 230
                     ***************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLHLNLSSSL SPIQNPSKQH PPPQSYHGFF SNNNSPFNLK TKTSSLSFSN STKNLTLKCR  60
HSGYFEPQEP QQQRFSPPDQ QGTLPSRVYV GYSVYKGKAA LTVEPRPPEF TPLDSGAFKL  120
TKEGFVLLQF APAASVRQYD WSRKQVFSLS VNEIGSLISL GAKDSCEFFH DPFKGKSDEG  180
RVRKVLKVEP LPDGSGHFFN LSVQNKLINV DENIYIPITK AEFAVLTSGF NFILPYLIGW  240
HAFATSVKPE DASRVNYTNA RSGAEYEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-118Whirly family protein