PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027151053.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 757aa MW: 87562 Da PI: 8.3075

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027151053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	88	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027151053.1 88 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWYNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 178 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED 60 EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV 120 CCCEGYRNEK WYNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVTRFI MEHNHPLASE 180 ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE 240 ERRKDIFNGD AEGALGFLAA KKDADDIVFG DVLVFDTTYK TNKYHKPLVV LAGVNNHLNS 300 TIFGCALLSD ERIETYEWVL STFVEAMKGR KPVAVMTDGD SAIRRAIKNL LPDACHRLCS 360 WHLHRNARSN IRCEEFNNRF YNLMARKCST LEFEDRWARL VNECGVVENE WVKKLYRRRR 420 LWAEAYLRDH FFAGMRSTQR CEKMNAFLNE YLNEKMRLYE FVRSFDLAIA WLRHTESKAV 480 YTSENIKPVL TTILPELEGS AAEVFTRNVF FMVRKHLNRQ ELLISEGWSE DGGSRTYYYS 540 KYGGHEISWR VDYDRSMEKL ICSCMKFESK GIPCAHMFRV MVVEGMNRIP EACISKRWTK 600 GVHCTNNGMK AFVADEQLTQ MARYDTLKSS CNTMCYYASY MDDAFNDLQQ MFDKHSVDLK 660 EKWIDRGYGG DGFAMDSRVR NDRSRRTFGL LDPRVSRSKG DHKHAEAKKK RKCGHCRCEM 720 QRLKEMVWLC MEVAAVTTDR LQSNTGLGIV FCYVSVG

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED  60
EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV  120
CCCEGYRNEK WYNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVTRFI MEHNHPLASE  180
ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE  240
ERRKDIFNGD AEGALGFLAA KKDADDIVFG DVLVFDTTYK TNKYHKPLVV LAGVNNHLNS  300
TIFGCALLSD ERIETYEWVL STFVEAMKGR KPVAVMTDGD SAIRRAIKNL LPDACHRLCS  360
WHLHRNARSN IRCEEFNNRF YNLMARKCST LEFEDRWARL VNECGVVENE WVKKLYRRRR  420
LWAEAYLRDH FFAGMRSTQR CEKMNAFLNE YLNEKMRLYE FVRSFDLAIA WLRHTESKAV  480
YTSENIKPVL TTILPELEGS AAEVFTRNVF FMVRKHLNRQ ELLISEGWSE DGGSRTYYYS  540
KYGGHEISWR VDYDRSMEKL ICSCMKFESK GIPCAHMFRV MVVEGMNRIP EACISKRWTK  600
GVHCTNNGMK AFVADEQLTQ MARYDTLKSS CNTMCYYASY MDDAFNDLQQ MFDKHSVDLK  660
EKWIDRGYGG DGFAMDSRVR NDRSRRTFGL LDPRVSRSKG DHKHAEAKKK RKCGHCRCEM  720
QRLKEMVWLC MEVAAVTTDR LQSNTGLGIV FCYVSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	421	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-88	FAR1 family protein