PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027150447.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 393aa    MW: 44541.6 Da    PI: 8.2036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027150447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.83e-401183544243
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv..selykal.ppsetsekn..sseelaalklfsevsPilkf 93 
                     lL ++Ae v++++  +a++lL      as++g+p+qR++ +f+eAL++++ +++    + + + + ++  ++   ++    a+ + ++  P+  f
  XP_027150447.1 118 LLQAAAEKVANQQYVQARKLLILCGCFASKSGSPVQRVVYCFAEALEKKIEQEWgiAPTEELIgKLRKPLDEMlaQVYMQPAMMTSQQEKPFTLF 212
                     678899*********************************************97622223333322222222222244444455669999****** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     + +ta + Il+av++++rvH iDf+i++G++W  ++qaLa R e p  +l+i +vg      k+ +eetg  L +fAe+l++pf++++ v+++l+
  XP_027150447.1 213 TEFTATESILNAVASAKRVHLIDFQINNGAHWTLIMQALAVRYECPLeHLKISAVGT----CKQITEETGMWLPSFAETLNLPFSYKM-VVSDLK 302
                     ******************************************965544*********....***************************.7999** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                     dl+ + ++++ +E la+ + l+l + l      +++ ++ + ++++l+P++vv  e
  XP_027150447.1 303 DLREDYFALEFDEELAIYSDLRLWTQL----VWRNHLKAPMGVIRKLKPRIVVAKE 354
                     *********************999998....44555778*************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MDTSPANYAN SVPHISYLAE GKKESPFLPL TSLEFLKQHG TKLKRLREGN LNELSSDTLM  60
DTPDHPALST ASLMKVAKVQ LLKFNSQKID VLSYVASRIG TQSGLHSEVP GDLELALLLQ  120
AAAEKVANQQ YVQARKLLIL CGCFASKSGS PVQRVVYCFA EALEKKIEQE WGIAPTEELI  180
GKLRKPLDEM LAQVYMQPAM MTSQQEKPFT LFTEFTATES ILNAVASAKR VHLIDFQINN  240
GAHWTLIMQA LAVRYECPLE HLKISAVGTC KQITEETGMW LPSFAETLNL PFSYKMVVSD  300
LKDLREDYFA LEFDEELAIY SDLRLWTQLV WRNHLKAPMG VIRKLKPRIV VAKEIIPHSK  360
EIIPHSNYPI RYQSTNINFF SFGRRYLRSF SQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-20GRAS family protein