PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027150186.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 297aa MW: 33689.6 Da PI: 7.4698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027150186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	122	168	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L +l+P + kKl+Ka++Le A ++Ik+Lq XP_027150186.1 122 YHVQAERKRREKLSDLFIALSKLVPGL-----KKLDKASVLEDANKHIKELQ 168 6899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MDMASFNNQF VINSKQDDQV DDGFFDIKPF LSEVFPAISY CNSDSIPIQM PQTCMKQKFK 60 QLNDTNLSPT HPTVESNLKG SSPFSNTQLI SFGKSSPYSS DEDEIVYNSR SPIRRTPIQA 120 QYHVQAERKR REKLSDLFIA LSKLVPGLKK LDKASVLEDA NKHIKELQER LKTLEEEKKN 180 NSTAPEIMVE RCIISTCSGN TSSFKGATLE LIPEIKVKIQ GKNVLVKILC EKKYHGSISS 240 MSSELEKLHL TILDTRILRF GCCTFDITLK AQMDNEFSVT MKDIIEHLQQ GIFQLHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	ERKRRE
2	128	133	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-42	bHLH family protein