PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149995.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 352aa MW: 38976.6 Da PI: 5.8126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	136	187	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+++P++ + ++ + a+i A++++k+L+ XP_027149995.1 136 QRMTHIAVERNRRKQMNDYLAVIRSMMPPS---YVQRGDQASIIGGAINFVKELE 187 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MALDAAIHMQ DSFGYFFKEF YTSGGGGGGG GANGGWGYGY GFGLQEEKGF VEMLDSGMDH 60 NLHGNWESSS SSVVMQNVKE WDPNSSPEAC TDDQLLLEGG SPTMEEPPES APTPAAGKRK 120 RRRTRTCKNK EELENQRMTH IAVERNRRKQ MNDYLAVIRS MMPPSYVQRG DQASIIGGAI 180 NFVKELEQHL QTLEAQRRRN SQQEQENGMS PPLFADFFTF PQYSTRSSST TLHSNTINSP 240 VTTTTSDHQP QPSRAATDQS PSALADIEVT MAESHANLKI LSKRRPRQLL KLVAGLQLLW 300 LTILHLNVTT TLDQKVLYSI SVKLEEGCQL TTIDEIADAV NHLLGRIEEG AV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MALDAAIHMQ DSFGYFFKEF YTSGGGGGGG GANGGWGYGY GFGLQEEKGF VEMLDSGMDH  60
NLHGNWESSS SSVVMQNVKE WDPNSSPEAC TDDQLLLEGG SPTMEEPPES APTPAAGKRK  120
RRRTRTCKNK EELENQRMTH IAVERNRRKQ MNDYLAVIRS MMPPSYVQRG DQASIIGGAI  180
NFVKELEQHL QTLEAQRRRN SQQEQENGMS PPLFADFFTF PQYSTRSSST TLHSNTINSP  240
VTTTTSDHQP QPSRAATDQS PSALADIEVT MAESHANLKI LSKRRPRQLL KLVAGLQLLW  300
LTILHLNVTT TLDQKVLYSI SVKLEEGCQL TTIDEIADAV NHLLGRIEEG AV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	KRKRRR
2	119	123	RKRRR
3	119	124	RKRRRT
4	137	148	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-71	bHLH family protein