PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149698.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 448aa MW: 49136.3 Da PI: 5.9509

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.8	2.9e-26	186	251	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf+kl++++e+g ++ln +a+ L +v ++RRiYDi+NVLe+++liek+ k++irwkg XP_027149698.1 186 RYDSSLGLLTKKFIKLIREAEDGCLDLNRAADLL---EV--QKRRIYDITNVLEGVGLIEKTTKSHIRWKG 251 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MSTSGDGRGR GRDRHIDIDL NVSLNSSFGN LSLAASGVPP PPRLEPQHRF SVPVVPSRVC 60 ERLDPFASIH SPPAAADPSA IINYCIAPNF LDIQPKDSFT SRNSPSLLGL PHTNEHGIFE 120 ANKGTSKTSS VYDITQAVNA ASLKLPVSLL EAKQCSKARG SNHVKPGTLE PNAEVLDNVG 180 VVGSCRYDSS LGLLTKKFIK LIREAEDGCL DLNRAADLLE VQKRRIYDIT NVLEGVGLIE 240 KTTKSHIRWK GYEMFGPEEL NNQASILKAE IERLFAEDCR LDDCIRKMDE KMNALVHAGT 300 SQRTLYLTEE DIMSQPCFRN KTVIAVKAPH ASTLEVPDPD EDIGFSERQY KLIVRSTTGP 360 IDLYLLSNHG GHHEDVKVKR RKLLDSSVVN GCRQGADDAY YSDASGLQSS DVSGINKIIP 420 SDGAVNDDYW LRSDYAVTAT DLWGTECS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MSTSGDGRGR GRDRHIDIDL NVSLNSSFGN LSLAASGVPP PPRLEPQHRF SVPVVPSRVC  60
ERLDPFASIH SPPAAADPSA IINYCIAPNF LDIQPKDSFT SRNSPSLLGL PHTNEHGIFE  120
ANKGTSKTSS VYDITQAVNA ASLKLPVSLL EAKQCSKARG SNHVKPGTLE PNAEVLDNVG  180
VVGSCRYDSS LGLLTKKFIK LIREAEDGCL DLNRAADLLE VQKRRIYDIT NVLEGVGLIE  240
KTTKSHIRWK GYEMFGPEEL NNQASILKAE IERLFAEDCR LDDCIRKMDE KMNALVHAGT  300
SQRTLYLTEE DIMSQPCFRN KTVIAVKAPH ASTLEVPDPD EDIGFSERQY KLIVRSTTGP  360
IDLYLLSNHG GHHEDVKVKR RKLLDSSVVN GCRQGADDAY YSDASGLQSS DVSGINKIIP  420
SDGAVNDDYW LRSDYAVTAT DLWGTECS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	4e-85	E2F/DP family protein