PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027149422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 306aa MW: 34116.7 Da PI: 6.7511 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.9 | 3.6e-15 | 229 | 265 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ + Tp +Rrgp g++tLCnaCGl+++ kg+ XP_027149422.1 229 CHHCGVGEnsTPAMRRGPTGPRTLCNACGLMWANKGT 265 *****99889************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence |
MAGIPKAMKA RHYDDGGDDR VDDDEEEEEE EEEEDEDEDE DDDGGGDDVM SDVNEVHLNS 60 VGNHNHRHKQ QQQHQHHSHR AGGGGQVVAT RTSELTLAFE GEVYVFPAVT PQKVQAVLLL 120 LGGRDVPTSV PDNDVIFDSN RKGVDDTLKR SNVSKRIASL VRFREKRKER CFDKKIRYSI 180 RKEVAQRMHR KNGQFASVKD GSGSSNWVSS KNNLQGDDKS HPETVLRRCH HCGVGENSTP 240 AMRRGPTGPR TLCNACGLMW ANKGTLRDLS KGGRTSSLHP VELGTPCDIK PLVLKGNSFK 300 GFNRWN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 146 | 151 | DTLKRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-68 | GATA family protein |