PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027149420.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 353aa    MW: 38828.4 Da    PI: 5.2088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027149420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.74.5e-15229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027149420.1 229 CHHCGVGEnsTPAMRRGPTGPRTLCNACGLMWANKGT 265
                     *****99889************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MAGIPKAMKA RHYDDGGDDR VDDDEEEEEE EEEEDEDEDE DDDGGGDDVM SDVNEVHLNS  60
VGNHNHRHKQ QQQHQHHSHR AGGGGQVVAT RTSELTLAFE GEVYVFPAVT PQKVQAVLLL  120
LGGRDVPTSV PDNDVIFDSN RKGVDDTLKR SNVSKRIASL VRFREKRKER CFDKKIRYSI  180
RKEVAQRMHR KNGQFASVKD GSGSSNWVSS KNNLQGDDKS HPETVLRRCH HCGVGENSTP  240
AMRRGPTGPR TLCNACGLMW ANKGTLRDLS KGGRTSSLHP VELATPSKAL TDGTDKYSAN  300
PDEGHLRGSG EDLTNHVPVG IPASSGDLNE QEGLLDFTST SETEVDIPTN FGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151DTLKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68GATA family protein