PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027149245.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 810aa MW: 91243.1 Da PI: 9.2558

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027149245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.9e-09	114	134	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C++G++C+F H+ XP_027149245.1 114 TCRNFAT-GNCRRGSQCRFLHP 134 5****.***********9 PP
2	zf-CCCH	18	5.3e-06	195	214	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+r G Ck G++C+F+H XP_027149245.1 195 CKDFMR-GKCKWGASCRFSHH 214 ****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MRERVVSPGF DGWGHRKHSN SSDDSLSRSR RYLEGGRNRS RDRGRNRSRS PSWSKGRDRS 60 GVRSRTMSRS RSRSRNRNRN SARGQTRSRS PFHGHRHDLQ GWNDSSGSGR SSQTCRNFAT 120 GNCRRGSQCR FLHPDRMDRD YLENDFVERS RSRPDRGHAL AYGEGRGRQS WDKGSDSNHQ 180 EDDSFRSKSR GTICCKDFMR GKCKWGASCR FSHHVDSGDN NGKDTRIALF ERDREHRTNE 240 SRKPLCKYFL AGKCNRDNCW FSHDGPIDSN HESRPRDAGG RQSLVDKNDQ WKGATWDQVE 300 PESKPVEGSR WSETVVPNRK IADAQLERRD NKWAHERSLR SPELKEKASE GNNYLSTQDW 360 REDNGGDAGA IKSVVVESSY DRQEYPLISK GNLDLVYTGS HAPNITKEPS SQHLSEASLH 420 AGLAEKSDIL HRPTVAEDNI VNASSFDGLG QLKDNRNTNN PEFMPGQSLN QNVIGNLSLN 480 RPLVSNDQRD NLFFPHPSNV RNVDLNGSGQ GLSSTLIIQN HTGSHQKEAA KTPEIQDFGA 540 PRSFYNNASN NQVPQNLLSP AAASPMHKFV AEQTQTHLHA ALNHLTSTAL VSALETAMQI 600 QPNTDVRSPV QLDPLEDGRG KLGDVNQTSG EVPYSYEQKN GIPFEEFSPM SGDNPQFGNT 660 LISNISNVQC HESPESKQQE APAASEVKDN NTESVVECHK GQEDLHKENG DEHVKVGNGN 720 NNKDDKDMRL FKNALVDFVK ETLKPTWKEG RMSREVHKTI VKKVVDKVTS TMQDHIPKTQ 780 GKTDQYLSHS KPKITKLVQA YVERHLKTDS

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MRERVVSPGF DGWGHRKHSN SSDDSLSRSR RYLEGGRNRS RDRGRNRSRS PSWSKGRDRS  60
GVRSRTMSRS RSRSRNRNRN SARGQTRSRS PFHGHRHDLQ GWNDSSGSGR SSQTCRNFAT  120
GNCRRGSQCR FLHPDRMDRD YLENDFVERS RSRPDRGHAL AYGEGRGRQS WDKGSDSNHQ  180
EDDSFRSKSR GTICCKDFMR GKCKWGASCR FSHHVDSGDN NGKDTRIALF ERDREHRTNE  240
SRKPLCKYFL AGKCNRDNCW FSHDGPIDSN HESRPRDAGG RQSLVDKNDQ WKGATWDQVE  300
PESKPVEGSR WSETVVPNRK IADAQLERRD NKWAHERSLR SPELKEKASE GNNYLSTQDW  360
REDNGGDAGA IKSVVVESSY DRQEYPLISK GNLDLVYTGS HAPNITKEPS SQHLSEASLH  420
AGLAEKSDIL HRPTVAEDNI VNASSFDGLG QLKDNRNTNN PEFMPGQSLN QNVIGNLSLN  480
RPLVSNDQRD NLFFPHPSNV RNVDLNGSGQ GLSSTLIIQN HTGSHQKEAA KTPEIQDFGA  540
PRSFYNNASN NQVPQNLLSP AAASPMHKFV AEQTQTHLHA ALNHLTSTAL VSALETAMQI  600
QPNTDVRSPV QLDPLEDGRG KLGDVNQTSG EVPYSYEQKN GIPFEEFSPM SGDNPQFGNT  660
LISNISNVQC HESPESKQQE APAASEVKDN NTESVVECHK GQEDLHKENG DEHVKVGNGN  720
NNKDDKDMRL FKNALVDFVK ETLKPTWKEG RMSREVHKTI VKKVVDKVTS TMQDHIPKTQ  780
GKTDQYLSHS KPKITKLVQA YVERHLKTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	47	RNRSRDRGRNR
2	39	49	RNRSRDRGRNR
3	69	79	RNRSRDRGRNR
4	69	77	RSRSRSRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-11	C3H family protein