PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027149044.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 262aa    MW: 27552.7 Da    PI: 8.6824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027149044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F +   L  H  +H
  XP_027149044.1 110 YKCSVCNKAFGSYQALGGHKASH 132
                     9*********9999998888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MALEALNSPT TPTPSFPFDN PSLRHLTEPW AKGKRSKRPR SLDHPQPTEE EYLALCLIML  60
ARGGKVNFNL PSSFPSSSSS STAAAAAPKA SLPPPPPHVS TSSDVPKLLY KCSVCNKAFG  120
SYQALGGHKA SHRKLPSGGG DDQPSTSTTT VTTTSTSGVG AGGSGRTHEC SICHKCFPSG  180
QALGGHKRCH YEGTIGGGSS GGHSGLTSSE GAGSTNTNSH RDFDLNLPAL PEFWSTEDEV  240
ESPHPAKKSR FNLPIKVENI KY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.18e-50C2H2 family protein