PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 332aa MW: 37001 Da PI: 10.0253 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 394 | 2.1e-120 | 1 | 332 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd+g+re r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e XP_027148500.1 1 MDDSGHREngRHKPpQGQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRE 90 999999877888773222223223444.....4************************************************************** PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 ns++ s +p+g+q+ +g+k++++ qq +++ pq+++++++ r++ +++a pi+ e +k+++++r+k+pk+ +++kk +ks kk XP_027148500.1 91 NSINsgnmSPCPPGCQITRGVKHMHHPQQhVHHqPQVNEPPYGSRDMPISDAIPISPGL---LEPAKSRRTKRTKDPKAVTSTKKA---SKSSKK 179 **99998889******************9644469********9999999999987643...333333333445555554444433...344555 PP GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243 vk+e++d + sk ++k++dl+ln+v++Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yP XP_027148500.1 180 VKREGEDLNktmfgkshewkpgqevgsgtddlnrqlgvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYP 274 555555533356777788999************************************************************************** PP GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+ XP_027148500.1 275 LPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 332 *********************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence |
MDDSGHRENG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60 AILQRDSAIA ERNNAIMERD NAIATLQYRE NSINSGNMSP CPPGCQITRG VKHMHHPQQH 120 VHHQPQVNEP PYGSRDMPIS DAIPISPGLL EPAKSRRTKR TKDPKAVTST KKASKSSKKV 180 KREGEDLNKT MFGKSHEWKP GQEVGSGTDD LNRQLGVSKP DWKDQDLGLN QVAFDESTMP 240 VPVCSCTGVL RPCYKWGNGG WQSSCCTTNL SMYPLPAVPN KRHARIGGRK MSGSAFNKLL 300 SRLAAEGHDL SNPVDLKEHW AKHGTNRYIT IK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-138 | BBR-BPC family protein |