PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027148493.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 242aa    MW: 26837.6 Da    PI: 10.1796
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027148493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly201.41.2e-62662041139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaal+  +++ptf +ldsg +kl+r+G+++l++ +a++erkydWekkq falsatev+++++++++++ effhdpa+ +sn+G+vrk+l+
  XP_027148493.1  66 SVYKGKAALSTSPMLPTFRKLDSGGVKLDRKGSIMLTFWPAVGERKYDWEKKQCFALSATEVGSMINMGPQDTREFFHDPAMLSSNAGQVRKSLS 160
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     ++P++dGsG+f++l+v n+++k+ne+f+vPv+ aefav+r++++
  XP_027148493.1 161 IKPHADGSGYFFSLNVVNNILKTNERFVVPVTAAEFAVMRTAFS 204
                     *****************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MLSRLSKQLS LSASTSRNLL FQKWFSPNDG TSLWSCSFAT QSGTSTARQS FVADGSMTDK  60
IFASYSVYKG KAALSTSPML PTFRKLDSGG VKLDRKGSIM LTFWPAVGER KYDWEKKQCF  120
ALSATEVGSM INMGPQDTRE FFHDPAMLSS NAGQVRKSLS IKPHADGSGY FFSLNVVNNI  180
LKTNERFVVP VTAAEFAVMR TAFSFALPRI MGWDQYSNQP LGTAHKNPSK VLPHLTDSEW  240
DK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-88Whirly family protein