PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027148207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | SBP | ||||||||
Protein Properties | Length: 1099aa MW: 121503 Da PI: 7.5231 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.2e-40 | 177 | 254 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Ce+dls+ak+yhrrhkvCe hska+++lvs+++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ XP_027148207.1 177 MCQVDNCEEDLSHAKDYHRRHKVCELHSKATKALVSKQMQRFCQQCSRFHPLPEFDEGKRSCRRRLAGHNRRRRKTQP 254 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1099 aa Download sequence |
MEEIGTQVAS PIFIRQASFA VGAGGGGSAR FCSQHPAPRK RSLPFTQQQQ HQQKPSDAWT 60 SKQWEWDSMR FIAKPHECHV PPPPPVMQHR HHARVMQEEQ ELNTAPTTSG LNNTSKSFHA 120 GEGSDHLRLK LGSDSGSGGK AGDAAGTSTS FNSTDEPVSR PNKRVRSGSP GSATYPMCQV 180 DNCEEDLSHA KDYHRRHKVC ELHSKATKAL VSKQMQRFCQ QCSRFHPLPE FDEGKRSCRR 240 RLAGHNRRRR KTQPEDAASR VLLPGSSEKG INSDLDIVNL LAVLARAQGN TEDRGSTLPD 300 KDQLLQILSK INALPLPANL AAKLPIFSNL GRSVPNQVPS QNQSHLDENS SPSTMDLLRL 360 LSGTPPVCAP NKMESEPERS SQGSDSEKTN SACSDQAACL NLNSGPAMEF PCIGGERSCS 420 STQSPVDDSD CCVEEIHPHL PLQLFSSSPE DNCPPKLPAS RKYFSSDSSN PSEERSPSYS 480 PTVVQKLFPV KRGTLKQGNT SSDGDGDANS RAIRDAGCNT SLQLFAGSSV GNDVGSIQSF 540 PFQAGYTSSS GSDHSPSSLN SDTQDRTGRI IFKLFDKDPS HLPGTLKTQI HNWLLNSPSE 600 MESYIRPGCV VLTVYVSMSL FSWEQFEDKL LHYVKSLIRD FNTDFWGSGR FLLYTGKHLA 660 SHVDGKLRIY KTKRAWRSPE LLSVSPLAVV HGQETSLLLR GRNLNVSGIK LNCSHTGDYT 720 VEDVSGPACQ EPEYNEINLC NFKVSTTASV LGRCFIEIEN GFRITSFPVI IADKPICQEL 780 RLLEYDFSEG AKMEDSMSAY YQHGPGRPGS REEVLHFLNE LGWLFQRKCN SSLLEGPDYK 840 ISRFKFLFIF SVEHDFCSLV KSLLDILLEI NLGKEGLKRV SLEMLSEIHL LNRAVKRRCK 900 NMIDLLLNYS IDDSSDTSKH YIFTPNHVGP GGVTPLHLAA CAFRSDDLID ALTSDPQEIG 960 LHCWKSVLDA NGLSPYAYAA MRNNHSYNRL VAQKLADKET GQVSVSVGNE IEQLWLEVNQ 1020 DHGPSFHIKR SQKPCSKCAA VAMRYRRIPG SQGLLHRPYI HSMLAIAAVC VCVCLFLRGA 1080 PDIGLVEPFK WENLCYGPI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 893 | 898 | RAVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | SBP family protein |