PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027148060.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 336aa    MW: 38050 Da    PI: 10.1878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027148060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
   XP_027148060.1 18 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                     899*****************************.***********996 PP
2Myb_DNA-binding57.63e-1870113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
   XP_027148060.1  70 RRPFSEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 113
                      679*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDETGGGASS DDARTCPRGH WRPAEDERLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINR RPFSEEEEER LLAAHRIHGN KWALISRLFP GRTDNAVKNH WHVIMARRQR  120
EQSKVCGKRS YHDTVNESNS ASHSFRRKNL KFQEDYSSKV SFDSSRFYGF DSNPIKNRIF  180
SVSTASSSPP WSFMRPSISN ANNSFSADLL GRKGSGQFSS SSLRGSREIT NSSLDQSLYR  240
NYLNSSIFGG YGNIAGAFNN HGHKRATVSP FGFPKIGDGN EAKGMIKRGL EIVGDNSYQF  300
GKNRTTIEQQ QHQQDDNESI KKEDVPFIDF LGVGIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-63MYB family protein