PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027147896.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 441aa MW: 47866.4 Da PI: 8.7538

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027147896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.2e-05	332	370	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_027147896.1 332 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 370 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTTTLGASG FGAALGSHAW TPNTNLNSAG 60 FGSAANTAIL NSRNPRLQND ILVSSLNGSM TQDFSFSWAN GSRGNNFTNQ SSHDLQLEMI 120 KREFSESYSN FSEMISSPSS SIEDVQLPIQ ATDYRRNENR EINDPNVKLL LRSLSSGDRN 180 NDFHRSCPGE LYCSTSSSSS LGATPKRGTF SQIYPTINVS EINQTPLANS SSFHMNSQAL 240 DLLNSARFSG IFCLPMVDQL GLSKNGSLSY GYDYLSQSIP MPISEPSNIT PLSYGVTETK 300 RSDISLEPKV PQAAPKRSRS ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM 360 EAIGYIKFLQ NQVETLSVPY LKSSRNKSSR TVHGGAMENG GEERKRDLRS RGLCLVPMSC 420 LSYVADGGGG VWPPPSFGGG T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTTTLGASG FGAALGSHAW TPNTNLNSAG  60
FGSAANTAIL NSRNPRLQND ILVSSLNGSM TQDFSFSWAN GSRGNNFTNQ SSHDLQLEMI  120
KREFSESYSN FSEMISSPSS SIEDVQLPIQ ATDYRRNENR EINDPNVKLL LRSLSSGDRN  180
NDFHRSCPGE LYCSTSSSSS LGATPKRGTF SQIYPTINVS EINQTPLANS SSFHMNSQAL  240
DLLNSARFSG IFCLPMVDQL GLSKNGSLSY GYDYLSQSIP MPISEPSNIT PLSYGVTETK  300
RSDISLEPKV PQAAPKRSRS ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM  360
EAIGYIKFLQ NQVETLSVPY LKSSRNKSSR TVHGGAMENG GEERKRDLRS RGLCLVPMSC  420
LSYVADGGGG VWPPPSFGGG T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	3e-69	bHLH family protein