PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026456422.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

SBP

Protein Properties

Length: 783aa MW: 87721.5 Da PI: 6.955

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026456422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.8	2.3e-36	118	194	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k+ XP_026456422.1 118 CCQVPGCEVDISELKGYHRRHRVCLSCANASSVFLDGETKRYCQQCGKFHILPDFDEGKRSCRRKLERHNKRRRRKA 194 6*************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MDPQNQLLDE NWEWNSLLDF NVDDSLNISW SNEFNQIDPS PPPEESNSHH NNQTGHGSDE 60 SDNNRVRKRD PRLTCENFLA GIIPCSCPEV DEKLLLEEEE KQAMKKRSRT STASSTICCQ 120 VPGCEVDISE LKGYHRRHRV CLSCANASSV FLDGETKRYC QQCGKFHILP DFDEGKRSCR 180 RKLERHNKRR RRKADSKSVG GKESQEGVIA DDLAGEGEAG KDSIPVSSHT VEEAVPESED 240 GRVSPLSSIP SSQSQDIRSA ASGETRKEPR KDNSTVTLSS SFGDDKSAYS SVCPTGRISF 300 KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TIFIAMPRYM WEKVAEDAGS 360 YIHRLVGAPD CLLHGRGTIT VYLNDMIFRV LKGGTSLKNV MVEMQAPRLH YVHPTCFEAG 420 KPVEFVVCGS NLLQPKFRFL ISFGGKYLPC TYCFAISNGK TASCHGNEVK KPCSDHQIYK 480 IRIPKTDAEV FGPAFIEVEN EFGLSNFIPI LFGDRQTCSG MKMVQKNLDE TLYSKRSQFG 540 VLDAVSGSCK VFGSRQKVMS ELILDIAWLL KEPNLEEDKL LSSSKVQRLN RLLSFLIGND 600 SIDLLEKILQ SLEDVMDAQK LFNPVNISDA DLNLFQKYII QARESVHKRI QSGGEVVQCN 660 QSSLSEGYCF SQNRSENGRL YFTPSNIVDM EMAMEKNLGS VRNSVTIPLL NGDITRDNTH 720 YQPQTEKSCS RIFSKAVMSP RPLVLIVAVA ALCSGVCAIL FHPNTVGELA VSIRRSLFGY 780 SKS

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MDPQNQLLDE NWEWNSLLDF NVDDSLNISW SNEFNQIDPS PPPEESNSHH NNQTGHGSDE  60
SDNNRVRKRD PRLTCENFLA GIIPCSCPEV DEKLLLEEEE KQAMKKRSRT STASSTICCQ  120
VPGCEVDISE LKGYHRRHRV CLSCANASSV FLDGETKRYC QQCGKFHILP DFDEGKRSCR  180
RKLERHNKRR RRKADSKSVG GKESQEGVIA DDLAGEGEAG KDSIPVSSHT VEEAVPESED  240
GRVSPLSSIP SSQSQDIRSA ASGETRKEPR KDNSTVTLSS SFGDDKSAYS SVCPTGRISF  300
KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TIFIAMPRYM WEKVAEDAGS  360
YIHRLVGAPD CLLHGRGTIT VYLNDMIFRV LKGGTSLKNV MVEMQAPRLH YVHPTCFEAG  420
KPVEFVVCGS NLLQPKFRFL ISFGGKYLPC TYCFAISNGK TASCHGNEVK KPCSDHQIYK  480
IRIPKTDAEV FGPAFIEVEN EFGLSNFIPI LFGDRQTCSG MKMVQKNLDE TLYSKRSQFG  540
VLDAVSGSCK VFGSRQKVMS ELILDIAWLL KEPNLEEDKL LSSSKVQRLN RLLSFLIGND  600
SIDLLEKILQ SLEDVMDAQK LFNPVNISDA DLNLFQKYII QARESVHKRI QSGGEVVQCN  660
QSSLSEGYCF SQNRSENGRL YFTPSNIVDM EMAMEKNLGS VRNSVTIPLL NGDITRDNTH  720
YQPQTEKSCS RIFSKAVMSP RPLVLIVAVA ALCSGVCAIL FHPNTVGELA VSIRRSLFGY  780
SKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	192	RRKLERHNKRRRR
2	188	193	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein