PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026449048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 386aa MW: 42678.5 Da PI: 7.8978 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 130 | 151 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd+C +aHg XP_026449048.1 130 SACPDFRK-GNCKRGDTCEYAHG 151 67******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence |
MMVHVPPWSL YDQDSVSGNN NNMMYQLPVS GVGSGCNSNN INNGGDYSPL CMSEAISALS 60 RYLPSNDLDS DDSDLSSVVD AYSCDEFRMY EFKVRRCSRG RSHDWTECPY AHPGEKARRR 120 DPRKFHYSGS ACPDFRKGNC KRGDTCEYAH GVFECWLHPA RYRTQPCKDG TSCRRRVCFF 180 AHTPEQLRIL PSQSQLSPRN ESSPPSYDGS PLRVALDSYY VGSSPTSTLN LSPPMSPNSG 240 SPPMSPSTGM GRSIIGSNSV NEMILNLRNL QLNKVKSAPS SWVLGSSSFC SPRASSSLRP 300 GFSSLPTTPT RTPTATRSGG VGYLDFWDQC SSLEEEPAME RVESGRNLRS KIYEKLSKEN 360 SFGRERVDSV PGSCGPDVQW VSELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-100 | C3H family protein |