PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026445695.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 296aa    MW: 32935.7 Da    PI: 4.2198
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026445695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-192064145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k+ie++ + qvtfskR+ g++ KA+ELS+ C+++va+i+fs+ gk
  XP_026445695.1 20 KKIEDNAKLQVTFSKRKGGLFRKASELSIVCGVDVAIIVFSPAGK 64
                    68****************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MESIKEEKKQ TSGRQKIDIK KIEDNAKLQV TFSKRKGGLF RKASELSIVC GVDVAIIVFS  60
PAGKAFACGH PTPDHIVDRF LNNGEASGRL PRIHEGDELS LCQQRDMEIQ RELEVEQEKR  120
GRFLEMLMNC NSGSSDESLW DAYIDGLSLA ELEQMRSDME RLTKIVEKRC EERVRSDVDS  180
FSWLMTVPDS DVDAVDVLDG KLSNVASSSS ESSPPVWDAY TVANADNSFD FNLDGKLSNY  240
VASSSSSSMT TPDSDVRAVA ADDSSNFVLD VNPITVDDPF EFLNIDVPDL LEIEWC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-32M-type_MADS family protein