PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443351.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 407aa MW: 46021.2 Da PI: 6.8503

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl XP_026443351.1 13 RGLWSPEEDEKLIRCIATHGHGCWSSVPKLAGLERCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	50.9	3.5e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_026443351.1 66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIRCIAT HGHGCWSSVP KLAGLERCGK SCRLRWINYL 60 RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMAQGI 120 DPKTHNLSSS STSGSSSSYN SACNNIINHH IYLQQPTSSI SHSHQYHHQL NSPQKIMVMS 180 RDYPSMDMMK NTREIPATFN VTPASPVQQP RPDRPLYDLV SIPSTNLNYC QNNNLTNSNI 240 NHLSVNGSTN LESCVSLMDT GNIGHKPISY SSLVYPSSDN GFEQFSSSEE HCMWASGGKG 300 ESFEEAAVAL QPTQQLSDCE ERYKQNYQKQ RQEQENVNVL TLVENPFEFD ESDEVTVKDI 360 SAGDTDKRDQ INSLSSLNNT NFSNFDFEFI DSTIMSCGIY SYHALQN

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLIRCIAT HGHGCWSSVP KLAGLERCGK SCRLRWINYL  60
RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMAQGI  120
DPKTHNLSSS STSGSSSSYN SACNNIINHH IYLQQPTSSI SHSHQYHHQL NSPQKIMVMS  180
RDYPSMDMMK NTREIPATFN VTPASPVQQP RPDRPLYDLV SIPSTNLNYC QNNNLTNSNI  240
NHLSVNGSTN LESCVSLMDT GNIGHKPISY SSLVYPSSDN GFEQFSSSEE HCMWASGGKG  300
ESFEEAAVAL QPTQQLSDCE ERYKQNYQKQ RQEQENVNVL TLVENPFEFD ESDEVTVKDI  360
SAGDTDKRDQ INSLSSLNNT NFSNFDFEFI DSTIMSCGIY SYHALQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-80	MYB family protein