PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026440604.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

RAV

Protein Properties

Length: 331aa MW: 38122.8 Da PI: 9.625

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026440604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.7	3.9e-10	50	95	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s++kGV++ k + +W A+I++ + r++lg+f ++ +Aa a++ a + XP_026440604.1 50 SRFKGVFRQK-KEKWGAQIYVK-----KDRYWLGTFKSESDAAMAYDSATVY 95 789*8777.7*****4.....6******88*****98655 PP
2	B3	84.8	7.6e-27	175	271	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.......---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+ ++fae++ + + e+++l++ d++ ++W+++++y+++s++yv+t+GW++F k+++L+++D+v+F+ XP_026440604.1 175 FQKELTPSDVSKLNRLVINRRFAEKYfpevskeE---KhpgviEDIQLSFFDREMKRWTFRYCYWRSSQSYVFTRGWNRFLKDKKLEAKDMVTFY 266 99************************987541...1356668899********************************************** PP E-SSS CS B3 84 ldgrs 88 +++ XP_026440604.1 267 KCQKE 271 44433 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MEDQGMLSMV SNITTLDGVP GEGGCSDSNS SSNSPRGSNK RQREETSNSS RFKGVFRQKK 60 EKWGAQIYVK KDRYWLGTFK SESDAAMAYD SATVYFRRHQ DSPRNYPLKT SLEPEFQNQF 120 PKKEELLRML RDGIYQTKFN EFVNSRSFNQ PDGLSLSLST TASANDAAVM YQQLFQKELT 180 PSDVSKLNRL VINRRFAEKY FPEVSKEEKH PGVIEDIQLS FFDREMKRWT FRYCYWRSSQ 240 SYVFTRGWNR FLKDKKLEAK DMVTFYKCQK EQKAFYMIDV AHNGAESNGG TYAAGSRVDF 300 GDQITVKEST GPPQPEGEVK KAVRLFGVNI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-69	RAV family protein