PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026429087.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family RAV
Protein Properties Length: 332aa    MW: 37773.1 Da    PI: 8.6525
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026429087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.6e-095092149
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    s++kGV+   ++g+W A+I++      + r++lg+f ++ +Aa a++ a
  XP_026429087.1 50 SRFKGVF-SLNKGKWGAQIYVR-----KYRYWLGTFESESDAAMAYDSA 92
                    789***6.5558*********4.....49*********88*******88 PP
2B387.79.4e-28174269187
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+ ++fae++       +   +     e+++l++ d++ ++W+++++y+++s++yv+t+GW++Fvk+++L+++D+v+F+
  XP_026429087.1 174 FQKELTPSDVSKLNRLVINRRFAEKYfpevskeE---KhpgviEDIQLSFFDREMKRWTFRYCYWRSSQSYVFTRGWNRFVKDKKLEAKDMVTFY 265
                     99**************************987541...1356668899************************************************ PP

                     E-SS CS
              B3  84 ldgr 87 
                       ++
  XP_026429087.1 266 KCQK 269
                     4443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MEDQGMLSMV SNITTLDGVP GEGGCSDSNS SSNSPRGSNK RQREETSSSS RFKGVFSLNK  60
GKWGAQIYVR KYRYWLGTFE SESDAAMAYD SATVYFRRSE DSPRNYPPQT SLEPDFQNLF  120
QKEELLSMLR DGIYQTKFNE FVNSRSLNQP DGLSLSLSTT ASANDAAVSY QKLFQKELTP  180
SDVSKLNRLV INRRFAEKYF PEVSKEEKHP GVIEDIQLSF FDREMKRWTF RYCYWRSSQS  240
YVFTRGWNRF VKDKKLEAKD MVTFYKCQKE QNAYYMIDVA QNGAESNGGT YAAGSSVNFG  300
DQITVKESTV TGPPQPEGEV KKAVRLFGVN IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-72RAV family protein