PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026427117.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 562aa MW: 61746.3 Da PI: 5.3412

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026427117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_026427117.1 41 KGPWTSQEDAILVEYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 88 79******************************************9986 PP
2	Myb_DNA-binding	48.7	1.7e-15	94	137	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ +v++++++G++ W++ a++++ gRt++++k++w++ XP_026427117.1 94 KGAFTADEERMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 137 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MSHSSNDSED DLLSKDQSDS QSIDEGSCGG SFGVGGVILK KGPWTSQEDA ILVEYVNKHG 60 EGNWNAVQKH SGLSRCGKSC RLRWANHLRP NLKKGAFTAD EERMIVELHA KMGNKWARMA 120 AHLPGRTDNE IKNYWNTRIK RRQRAGLPLY PPEVRMQTLN GNYQYQKSDE FNNVDMQQHG 180 LLHANSYEIP DVTFDGLKGN QGFLSYEHAL PDMSVGMLPQ GLGSSLNYNF YPTTMHRLKR 240 LRDPENLFPG FNSSLASSAV SPFDPFQSES CEKIHQPPFG LTFPYVPNRN KIKKSSPFGA 300 RSGSHAFSNG NFSTSKLING PVKLELPSFQ YPDTDVGGCW GTSPVLPSLE SVDTFTQSSP 360 LSNGQVQSDC LSSRNSGLLD ALLQEAQTLK NQSSEKSSSS SVVTPSDLMD GSNLDLCETG 420 WEDYRDPISP LGRSAASVFG GCTPISGSST DDPALSESLP GSNIKQEPVE HITNPYGGEE 480 GTSPKLDFSR PDALLGAGWF DHRSCANDNS KADTIAALLG EDLCNDYKHM NETNTITQEW 540 ETVSKEWDNM PDGCHVIQTS LR

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MSHSSNDSED DLLSKDQSDS QSIDEGSCGG SFGVGGVILK KGPWTSQEDA ILVEYVNKHG  60
EGNWNAVQKH SGLSRCGKSC RLRWANHLRP NLKKGAFTAD EERMIVELHA KMGNKWARMA  120
AHLPGRTDNE IKNYWNTRIK RRQRAGLPLY PPEVRMQTLN GNYQYQKSDE FNNVDMQQHG  180
LLHANSYEIP DVTFDGLKGN QGFLSYEHAL PDMSVGMLPQ GLGSSLNYNF YPTTMHRLKR  240
LRDPENLFPG FNSSLASSAV SPFDPFQSES CEKIHQPPFG LTFPYVPNRN KIKKSSPFGA  300
RSGSHAFSNG NFSTSKLING PVKLELPSFQ YPDTDVGGCW GTSPVLPSLE SVDTFTQSSP  360
LSNGQVQSDC LSSRNSGLLD ALLQEAQTLK NQSSEKSSSS SVVTPSDLMD GSNLDLCETG  420
WEDYRDPISP LGRSAASVFG GCTPISGSST DDPALSESLP GSNIKQEPVE HITNPYGGEE  480
GTSPKLDFSR PDALLGAGWF DHRSCANDNS KADTIAALLG EDLCNDYKHM NETNTITQEW  540
ETVSKEWDNM PDGCHVIQTS LR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-106	MYB family protein