PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026425994.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

SRS

Protein Properties

Length: 369aa MW: 39680.5 Da PI: 8.5824

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026425994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	193.4	7.8e-60	147	316	3	152
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsst 89 s t++C+dCGnqakkdC+h+RCRtCCksrg+dC+th+kstWv+a++rr+rq + ++++ +++ k++r s++q+a++++ XP_026425994.1 147 SSTKTCHDCGNQAKKDCSHNRCRTCCKSRGYDCSTHIKSTWVSASRRRDRQLISPLGNDDQQQGDvgggtssgSTSGVKKPRLVPSQNQTASHTS 241 57889*******************************************988777766666555789988878888899998877777777777 PP DUF702 90 klssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++++++++++tss lP++v+++a f+cvrvs + dgeee+aYq+ v+igGhvfkG+Ly++G+ XP_026425994.1 242 TSNNNTPPRSFDTSSshhhqdpsfreaLPKQVKAPAAFKCVRVSPIGDGEEEIAYQAIVKIGGHVFKGFLYNKGI 316 77777889999999999******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGMVGLRSSD VLFVAPATSF QQHQQNHHDH QDPFYAHDHH HQQQQNPMNN SGNNNNSSTA 60 LGIGVIPLLT TTGSTQLWQN QQTHHNVNYP VVKKPVLINY ENSLNQSNIS IFSNNNNNHG 120 AGNVTIAGFA GGADAGNNAN LSMISSSSTK TCHDCGNQAK KDCSHNRCRT CCKSRGYDCS 180 THIKSTWVSA SRRRDRQLIS PLGNDDQQQG DVGGGTSSGS TSGVKKPRLV PSQNQTASHT 240 STSNNNTPPR SFDTSSSHHH QDPSFREALP KQVKAPAAFK CVRVSPIGDG EEEIAYQAIV 300 KIGGHVFKGF LYNKGIVSGN EGLPNISELH LGGSGKNWPS SSQIIDHSDV YGGAATGLLG 360 SGVRVWERV

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGMVGLRSSD VLFVAPATSF QQHQQNHHDH QDPFYAHDHH HQQQQNPMNN SGNNNNSSTA  60
LGIGVIPLLT TTGSTQLWQN QQTHHNVNYP VVKKPVLINY ENSLNQSNIS IFSNNNNNHG  120
AGNVTIAGFA GGADAGNNAN LSMISSSSTK TCHDCGNQAK KDCSHNRCRT CCKSRGYDCS  180
THIKSTWVSA SRRRDRQLIS PLGNDDQQQG DVGGGTSSGS TSGVKKPRLV PSQNQTASHT  240
STSNNNTPPR SFDTSSSHHH QDPSFREALP KQVKAPAAFK CVRVSPIGDG EEEIAYQAIV  300
KIGGHVFKGF LYNKGIVSGN EGLPNISELH LGGSGKNWPS SSQIIDHSDV YGGAATGLLG  360
SGVRVWERV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-58	SRS family protein