PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026421388.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 446aa MW: 48582.3 Da PI: 6.3795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026421388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.2e-16	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l XP_026421388.1 39 KGPWTAGEDAILTEYVKRHGEGNWNAVQKNSGLARCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	49.7	8.4e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w++ XP_026421388.1 92 KGSFSPEEEHLILELHSKLGNK-WARMAAQLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MMNKHKSINE NGVLGRREDF SPDHHGGGGD GGGGGGLKKG PWTAGEDAIL TEYVKRHGEG 60 NWNAVQKNSG LARCGKSCRL RWANHLRPNL KKGSFSPEEE HLILELHSKL GNKWARMAAQ 120 LPGRTDNEIK NYWNTRVKRR QRAGLPLYPE NLQRQSSSSL SFQLPNQNQS NDLIFSSFQQ 180 QKPSFSTSPF SLFNPANTTI STPPFALQFH EYKRYRSANS NYGFSLPFSS NDHAQLPSSL 240 FSQNHSSQLQ PSSNVGGYHF GNFELNPSTQ IQRNSFEPDE LGGSSSDFSL KLELPSIQLP 300 DGAVAAAANS GSVAEGCNLS SQSYLLDALL QQAQTMANAD NGKRSEKRYG FDQFAQDAPT 360 SESAFNMNGS NPSASQGSFG AGMKLKEEPK EVINSGDDDL SSLLDIVPPP MHIGEWGYSD 420 NSGEISNGPS SGVTEDDVGG LDQMNN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MMNKHKSINE NGVLGRREDF SPDHHGGGGD GGGGGGLKKG PWTAGEDAIL TEYVKRHGEG  60
NWNAVQKNSG LARCGKSCRL RWANHLRPNL KKGSFSPEEE HLILELHSKL GNKWARMAAQ  120
LPGRTDNEIK NYWNTRVKRR QRAGLPLYPE NLQRQSSSSL SFQLPNQNQS NDLIFSSFQQ  180
QKPSFSTSPF SLFNPANTTI STPPFALQFH EYKRYRSANS NYGFSLPFSS NDHAQLPSSL  240
FSQNHSSQLQ PSSNVGGYHF GNFELNPSTQ IQRNSFEPDE LGGSSSDFSL KLELPSIQLP  300
DGAVAAAANS GSVAEGCNLS SQSYLLDALL QQAQTMANAD NGKRSEKRYG FDQFAQDAPT  360
SESAFNMNGS NPSASQGSFG AGMKLKEEPK EVINSGDDDL SSLLDIVPPP MHIGEWGYSD  420
NSGEISNGPS SGVTEDDVGG LDQMNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	2e-70	MYB family protein