PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026421060.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 806aa MW: 87823.7 Da PI: 6.5193

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026421060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	449	469	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+ Gd+CkF+H+ XP_026421060.1 449 YCEFYLK-GRCQKGDSCKFSHD 469 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MGEAIHSGFR RRRSHLKSKT VDTLLKIMSL CADDQESQNS LPVVSDAINS GVRRNGSENE 60 LVKDKSAEVV LGLEDSAILD DEVGSFVIKE PQQRNVDEAK VVDEHITNEI LEPITHTEDM 120 QVQSSSSEPK VVNEVAGEHQ QEETCLAELV NLDSSVSLPA DTGIENVVAG EQQQEETSLS 180 EQVNLDSAAS LLTDMDIEDG EIPDGLGLYN ELVDLIHEDL ASNEEKSVGK DQSQHGVIKE 240 SEFEARQQDD LGAVEKYMSS TCTPEEILMK KNKRKLDRDY AVGVGNRNLK RGYGDDLLLG 300 AGNGGKEIEE ANVDAPAKKA CLIDRNLEQG YGDDRLQQAG NTRGENSEAK VAAITKEVEL 360 CNRKLERGYD DDWLGDAGTS GKDICEAEVH EKTKKNTKVV EKRLRVVGKE RKEKKKMNGR 420 KKRAQTRREQ GVKRLRIEPQ ISKPKPPKYC EFYLKGRCQK GDSCKFSHDT TPLTKSQPCK 480 FLALQQCLKG DDCPFDHQLS KYPCNNFASN GSCYRGDKCL FSHKIAETPK PSDVTPTEAV 540 SQHSPNNINT KRSQNTKNIS PCTLDKVSSG GSLKTPSTTG SQVHKNPEQS VLEKLRSPAQ 600 PPKGVTLLSF GNSPSNNSSV RPPAQPPKGV TLLSFGNSPP NHSSIRPAVQ PPKGVTLLSF 660 GNSPLNNSSN KTNSNGTEAS TQKDQETLKT PQSSNELFQK TTPSTLASAS QCSQNPLQNA 720 QNKNSAQSSP SSSALSFAAK YESEMMKNRS KIPTGLCTTT TSNSSKTPSS STAASSSIDN 780 IQNRLLKASP LLQEFLFGFG GTDGKL

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MGEAIHSGFR RRRSHLKSKT VDTLLKIMSL CADDQESQNS LPVVSDAINS GVRRNGSENE  60
LVKDKSAEVV LGLEDSAILD DEVGSFVIKE PQQRNVDEAK VVDEHITNEI LEPITHTEDM  120
QVQSSSSEPK VVNEVAGEHQ QEETCLAELV NLDSSVSLPA DTGIENVVAG EQQQEETSLS  180
EQVNLDSAAS LLTDMDIEDG EIPDGLGLYN ELVDLIHEDL ASNEEKSVGK DQSQHGVIKE  240
SEFEARQQDD LGAVEKYMSS TCTPEEILMK KNKRKLDRDY AVGVGNRNLK RGYGDDLLLG  300
AGNGGKEIEE ANVDAPAKKA CLIDRNLEQG YGDDRLQQAG NTRGENSEAK VAAITKEVEL  360
CNRKLERGYD DDWLGDAGTS GKDICEAEVH EKTKKNTKVV EKRLRVVGKE RKEKKKMNGR  420
KKRAQTRREQ GVKRLRIEPQ ISKPKPPKYC EFYLKGRCQK GDSCKFSHDT TPLTKSQPCK  480
FLALQQCLKG DDCPFDHQLS KYPCNNFASN GSCYRGDKCL FSHKIAETPK PSDVTPTEAV  540
SQHSPNNINT KRSQNTKNIS PCTLDKVSSG GSLKTPSTTG SQVHKNPEQS VLEKLRSPAQ  600
PPKGVTLLSF GNSPSNNSSV RPPAQPPKGV TLLSFGNSPP NHSSIRPAVQ PPKGVTLLSF  660
GNSPLNNSSN KTNSNGTEAS TQKDQETLKT PQSSNELFQK TTPSTLASAS QCSQNPLQNA  720
QNKNSAQSSP SSSALSFAAK YESEMMKNRS KIPTGLCTTT TSNSSKTPSS STAASSSIDN  780
IQNRLLKASP LLQEFLFGFG GTDGKL