PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026417503.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MYB
Protein Properties Length: 495aa    MW: 55228.2 Da    PI: 7.3777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026417503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-18140186148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd llvd+vkq+G + W+ Ia+++  gR +kqc++rw+++l
   XP_026417503.1 140 KGQWTDEEDRLLVDLVKQYGERKWAQIAQKLL-GRAGKQCRERWHNHL 186
                      799****************************9.*************97 PP
2Myb_DNA-binding54.52.6e-17192234145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++ lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+
   XP_026417503.1 192 KDTWSEEEELMLVKAHEKIGNR-WAEIAKQIP-GRTENAIKNHWN 234
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MEGNGGGLVY MNSHLLRPTP PPLEAIDRFL WSSSNEKQAR INIDNKGFCD QFSSSTSPGG  60
ITRTPTCFEH GNGGGFMLPR SAIPDIGLAG GFFANHNGSS QIFTNNNAGS REMDYFGEKK  120
KCFGVEKRAK NGGVSTTLIK GQWTDEEDRL LVDLVKQYGE RKWAQIAQKL LGRAGKQCRE  180
RWHNHLRPDI KKDTWSEEEE LMLVKAHEKI GNRWAEIAKQ IPGRTENAIK NHWNATKRRL  240
NSRRKNKKVV GQGRKSQPSI LQDYIKTKII TSSVSSIANS TTTSPTGSIT HTTNPSDHVN  300
PEPSESSFTD DSSTAFLDHT YNDELQFVQK FFRNLDNEPY SSDGATTTVR SYTHERSFQA  360
GQSPENQMGL DLVSNNTTLS LKIEKCNYLA LNNNTATETL HLSSDMQGYQ QGTACTSSVP  420
NSTSPSTLYS DTYLSYLLNG GLSAGSSSSL NEDYIDYYQH QPNVCIQQND QAASWYTGKK  480
EMDLIEMLSY SQCMH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239249RLNSRRKNKKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-56MYB family protein