PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414462.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

SRS

Protein Properties

Length: 378aa MW: 40490.3 Da PI: 8.268

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	192.2	1.9e-59	152	322	3	152
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsalss 88 s t++C+dCGnqakkdC+h+RCRtCCksrg+dC+th+kstWv+a++rr+rq +++++++ +++ k++r s++q+a+++ XP_026414462.1 152 SSTKTCHDCGNQAKKDCSHNRCRTCCKSRGYDCSTHIKSTWVSASRRRDRQLISPLGNNDDQQQGdvgggtssgSTSGVKKPRLVPSQNQTASHT 246 57889*******************************************887776665555544789999888888889999887777777777 PP DUF702 89 tklssaeskkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 ++ ++++++++++tss lP++v+++a f+cvrvs + dgeee+aYq+ v+igGhvfkG+Ly++G+ XP_026414462.1 247 STSNNNTPPRSFDTSSshhhqdasfreaLPKQVHAPAAFKCVRVSPIGDGEEEIAYQAIVKIGGHVFKGFLYNKGI 322 777777889999999999******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGMVGLRSSD VLFVAPASSF QQHQQNHHHQ DPFYAHDHHH HQQQNPMNNS GNNNNSPTAL 60 GIGVIPLLTT SVSTQLWQNQ QTHHNVNYPV VKKPVLINYE NSLDQSNISI FNNNNHNSNN 120 NNNHGAGNVT IAGFAGGADA GNNANLSMIS SSSTKTCHDC GNQAKKDCSH NRCRTCCKSR 180 GYDCSTHIKS TWVSASRRRD RQLISPLGNN DDQQQGDVGG GTSSGSTSGV KKPRLVPSQN 240 QTASHTSTSN NNTPPRSFDT SSSHHHQDAS FREALPKQVH APAAFKCVRV SPIGDGEEEI 300 AYQAIVKIGG HVFKGFLYNK GIVSGNEGLP NISELHLGGS GKNWPSSSQI IDHSDVYGGA 360 ATGLLGSGGM SFGIPAIH

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGMVGLRSSD VLFVAPASSF QQHQQNHHHQ DPFYAHDHHH HQQQNPMNNS GNNNNSPTAL  60
GIGVIPLLTT SVSTQLWQNQ QTHHNVNYPV VKKPVLINYE NSLDQSNISI FNNNNHNSNN  120
NNNHGAGNVT IAGFAGGADA GNNANLSMIS SSSTKTCHDC GNQAKKDCSH NRCRTCCKSR  180
GYDCSTHIKS TWVSASRRRD RQLISPLGNN DDQQQGDVGG GTSSGSTSGV KKPRLVPSQN  240
QTASHTSTSN NNTPPRSFDT SSSHHHQDAS FREALPKQVH APAAFKCVRV SPIGDGEEEI  300
AYQAIVKIGG HVFKGFLYNK GIVSGNEGLP NISELHLGGS GKNWPSSSQI IDHSDVYGGA  360
ATGLLGSGGM SFGIPAIH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	4e-58	SRS family protein