PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026413122.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 666aa MW: 76773.3 Da PI: 8.3798

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026413122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.3e-08	117	196	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +s+skk+ +g+ + t+ C ++g +++kkk e ++r++ + ++gC +lk + +kw + + HnHel+ XP_026413122.1 117 ISHSKKT-LKGKGSRITLGCERSGWYTDHKKKslqpkpPEPRKRKSRTRKCGCPFQLKCDWVEGNKWTLRVVCGRHNHELS 196 4455554.7777899*******99999999999998888888999999******999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MLILGEKLWR SILLLRAPLI LAGTVNQQRL RKMVDGPINS SPHMEIIPSV GSPQLDVEPG 60 VDSPQLVETT SITETDSQLI TVDLTPFFVT DQVFDSREAT IEWCQEVGKK KNTVLVISHS 120 KKTLKGKGSR ITLGCERSGW YTDHKKKSLQ PKPPEPRKRK SRTRKCGCPF QLKCDWVEGN 180 KWTLRVVCGR HNHELSDTLT GHAYAGRLKE EEKQLVLHLT ATGVPPQQVL IALKEKSKEN 240 YSTLKTIYNV KSKHRKSQVE GKSAMQQVME LLAQYHYVEK HRSNEETNEV RDIFWAHPET 300 MLLAKCFPSV LMVDSTCKTN RFKMPLIHIV GISSTGKLFT VAFAFMEAET EQHYIWALTQ 360 LKWMYMPNTL PSLFVTDRES ALVNAIDIVF PRSSRLLCTW HLNQQVQTNC EKAFEDNEEW 420 EQFHTDWNHV WKAETMDEYG DAYADFATKW APKYPSCIVY LRDTWLIQKE KFALAWTNKI 480 KHFGNTTTKA DKEHENLRKY LVSAVDSYSS CWKAMHNMIK DEIAQIKLSF ELSLTTLNQE 540 HLSPALEELR NHVSHKALEL VLFEVHRADN LGNEESSCSC FLHSTHGLPC AHELVKYVPQ 600 GKAIPLLNID SHWKQLSIVP TQELYNGFDV LPEFQLLRQR WIEAVEPRRS LLLRKIKDIA 660 TFKPRN

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MLILGEKLWR SILLLRAPLI LAGTVNQQRL RKMVDGPINS SPHMEIIPSV GSPQLDVEPG  60
VDSPQLVETT SITETDSQLI TVDLTPFFVT DQVFDSREAT IEWCQEVGKK KNTVLVISHS  120
KKTLKGKGSR ITLGCERSGW YTDHKKKSLQ PKPPEPRKRK SRTRKCGCPF QLKCDWVEGN  180
KWTLRVVCGR HNHELSDTLT GHAYAGRLKE EEKQLVLHLT ATGVPPQQVL IALKEKSKEN  240
YSTLKTIYNV KSKHRKSQVE GKSAMQQVME LLAQYHYVEK HRSNEETNEV RDIFWAHPET  300
MLLAKCFPSV LMVDSTCKTN RFKMPLIHIV GISSTGKLFT VAFAFMEAET EQHYIWALTQ  360
LKWMYMPNTL PSLFVTDRES ALVNAIDIVF PRSSRLLCTW HLNQQVQTNC EKAFEDNEEW  420
EQFHTDWNHV WKAETMDEYG DAYADFATKW APKYPSCIVY LRDTWLIQKE KFALAWTNKI  480
KHFGNTTTKA DKEHENLRKY LVSAVDSYSS CWKAMHNMIK DEIAQIKLSF ELSLTTLNQE  540
HLSPALEELR NHVSHKALEL VLFEVHRADN LGNEESSCSC FLHSTHGLPC AHELVKYVPQ  600
GKAIPLLNID SHWKQLSIVP TQELYNGFDV LPEFQLLRQR WIEAVEPRRS LLLRKIKDIA  660
TFKPRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	160	KKKSLQPKPPEPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1 family protein