PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026412896.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 716aa MW: 81728.1 Da PI: 7.6004

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026412896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.1	2.4e-07	89	157	23	89
FAR1 23 krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 k+ g+ ++ C ++g +++ ++ ++ ++r+r+++++gC kl+ + +kw++ + +HnHe+ XP_026412896.1 89 KQGGKGSVVELGCERSGVYSRRMSNisKSGQKRKRESKKCGCPLKLRCTCIGGNKWKLRVCCGKHNHEV 157 55667788899****99999998777889999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MMEDYDIVKE EPQSFPSEGL NVDGGLVNHP QNETDINEEN DPVSMEGIDL TQCFQIDKEF 60 DSREAIIKWC QEVAGKNNTV LATIKSVKKQ GGKGSVVELG CERSGVYSRR MSNISKSGQK 120 RKRESKKCGC PLKLRCTCIG GNKWKLRVCC GKHNHEVERT QAVDVLSMED AVIIEDNNAV 180 KENLSTEGGS SNGSCREASR SLNAIRDSES RPSDDFNVKK GSVSQPEKDT SVMEEEVLVF 240 EEGIGLTHCC QTDKDLDGEK CSDSHLQKDT NVMEEDVSIF KEGIDLTQCF QTDKEFDTRE 300 AVIHWCQEVA RSNNTGLVIS KTLKKPGGKG SLVELGCVRS GAYRSHRKNG DKVLRKRKVL 360 SKKCRCPFKL RSTCVEGNKW KLRVCCGRHN HEVERIPPGH SYFRRWKEDE DQLLCELTAS 420 GLRPRQVLHA LKERSKENFL DIKTIYNRRT RLKLHGTGRS SVMQQVMKLS AQYHYMEWHR 480 KDKETCELKD IIWAHPESTL LAQCFPFMLM IDCTYKTSKF KIPFFHVAGV SSVGTSFTVA 540 YAFIEEETEE HFSWALMQLK SLYSPNNLPS VVLVNGKLPL INAISIVFPG ADKLICPNHI 600 AKTIEINCKN AFENSEMWNN FCQDWENVWK AETKEDYVDM YTEFVTTWVA RNVTCITYIR 660 DTWLVHKESF IIAWAQKIKH FGYTVINRVE NERDQLKKCM ESSGHSFFLV GKHCTT

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MMEDYDIVKE EPQSFPSEGL NVDGGLVNHP QNETDINEEN DPVSMEGIDL TQCFQIDKEF  60
DSREAIIKWC QEVAGKNNTV LATIKSVKKQ GGKGSVVELG CERSGVYSRR MSNISKSGQK  120
RKRESKKCGC PLKLRCTCIG GNKWKLRVCC GKHNHEVERT QAVDVLSMED AVIIEDNNAV  180
KENLSTEGGS SNGSCREASR SLNAIRDSES RPSDDFNVKK GSVSQPEKDT SVMEEEVLVF  240
EEGIGLTHCC QTDKDLDGEK CSDSHLQKDT NVMEEDVSIF KEGIDLTQCF QTDKEFDTRE  300
AVIHWCQEVA RSNNTGLVIS KTLKKPGGKG SLVELGCVRS GAYRSHRKNG DKVLRKRKVL  360
SKKCRCPFKL RSTCVEGNKW KLRVCCGRHN HEVERIPPGH SYFRRWKEDE DQLLCELTAS  420
GLRPRQVLHA LKERSKENFL DIKTIYNRRT RLKLHGTGRS SVMQQVMKLS AQYHYMEWHR  480
KDKETCELKD IIWAHPESTL LAQCFPFMLM IDCTYKTSKF KIPFFHVAGV SSVGTSFTVA  540
YAFIEEETEE HFSWALMQLK SLYSPNNLPS VVLVNGKLPL INAISIVFPG ADKLICPNHI  600
AKTIEINCKN AFENSEMWNN FCQDWENVWK AETKEDYVDM YTEFVTTWVA RNVTCITYIR  660
DTWLVHKESF IIAWAQKIKH FGYTVINRVE NERDQLKKCM ESSGHSFFLV GKHCTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	357	DKVLRKR
2	352	358	KVLRKRK
3	355	381	RKRKVLSKKCRCPFKLRSTCVEGNKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-14	FAR1 family protein