PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407865.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 453aa MW: 49062.9 Da PI: 7.5734

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_026407865.1 52 PGEPDCIYYLRTGLCGYGTNCRFNHP 77 5789*********************9 PP
2	zf-CCCH	27.2	6.5e-09	104	124	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f++tGtCk+G+ Ck++H++ XP_026407865.1 104 QYFMKTGTCKFGAICKYNHPR 124 59*****************96 PP
3	zf-CCCH	39.3	1.1e-12	145	169	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG Ck+G CkF+H++ XP_026407865.1 145 EKPCPYYMRTGNCKFGIACKFNHPQ 169 689********************97 PP
4	zf-CCCH	37.3	4.5e-12	294	319	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++Ck++H++ XP_026407865.1 294 EQPECQYYMKTGRCKFGPSCKYHHPR 319 5799********************96 PP
5	zf-CCCH	35.7	1.5e-11	340	365	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++ +G+CkyG+ CkF H++ XP_026407865.1 340 GQAVCTYYSLYGICKYGAACKFDHPM 365 7899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MPDNNWQVQN GVSSTSIATS DNLEEAMWQL KIQAQEGQDG IASNPASYPD RPGEPDCIYY 60 LRTGLCGYGT NCRFNHPVYS GQAAQHRGEL PERAGQPDCQ HMSQYFMKTG TCKFGAICKY 120 NHPRDRHDAG QIPLNILGLP MRQEEKPCPY YMRTGNCKFG IACKFNHPQP AAALGAVLPV 180 TGPTAYGSAG SSVTPPSGLP YAGGLPTWSL PRGPSISGQS MQGGPQAYMP VVLSSSQGLL 240 PTQPGWSTYM GTMTPVSSTN VLGSHLVYAS KQGESGPNGQ VHSSSFTQYP ERPEQPECQY 300 YMKTGRCKFG PSCKYHHPRD KIAPLATNSM SPYGLPLRPG QAVCTYYSLY GICKYGAACK 360 FDHPMAGFYN CGGSMPSLSI PDSSIIPYQR NSLPSQSPET SPSKSSRLPD QTEESNGKQQ 420 DQNIKPPEDP KQDSLSSTNP KSSSLEPLND LSD

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MPDNNWQVQN GVSSTSIATS DNLEEAMWQL KIQAQEGQDG IASNPASYPD RPGEPDCIYY  60
LRTGLCGYGT NCRFNHPVYS GQAAQHRGEL PERAGQPDCQ HMSQYFMKTG TCKFGAICKY  120
NHPRDRHDAG QIPLNILGLP MRQEEKPCPY YMRTGNCKFG IACKFNHPQP AAALGAVLPV  180
TGPTAYGSAG SSVTPPSGLP YAGGLPTWSL PRGPSISGQS MQGGPQAYMP VVLSSSQGLL  240
PTQPGWSTYM GTMTPVSSTN VLGSHLVYAS KQGESGPNGQ VHSSSFTQYP ERPEQPECQY  300
YMKTGRCKFG PSCKYHHPRD KIAPLATNSM SPYGLPLRPG QAVCTYYSLY GICKYGAACK  360
FDHPMAGFYN CGGSMPSLSI PDSSIIPYQR NSLPSQSPET SPSKSSRLPD QTEESNGKQQ  420
DQNIKPPEDP KQDSLSSTNP KSSSLEPLND LSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	8e-93	C3H family protein