PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026405973.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 342aa MW: 38995 Da PI: 5.3439

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026405973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l ++++ G g+W+ ++ + g+ R++k+c++rw +yl XP_026405973.1 14 RGLWSPEEDEKLTHYITNNGYGCWSEVPDRAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	54.6	2.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l+++++ G++ W+ Ia++++ gRt++++k++w+++ XP_026405973.1 67 RGRFTPEEEKLIIKLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGQHSCCNQQ KVKRGLWSPE EDEKLTHYIT NNGYGCWSEV PDRAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIK LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKVTRKS 120 SSSPSLISLP TTSSSVLPTN YNNELLQQSS NYSMDTQVDL LTNTTNLQDH STLLLQETNT 180 FPNLFMFDPG LISISNNSLD VEQQNDDNNN GIHIPKSWKS SNEQDRQTTL LPLHPLPVCS 240 NFAAGIVSDE NYMASTSYYS DESHLNHHNM VPATEIGMDY LQRQDHELMI NDSEAWVEND 300 HQQQHGPESF LIWENFEGQI SGEGSSNMED ILSSSYPSSS SF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGQHSCCNQQ KVKRGLWSPE EDEKLTHYIT NNGYGCWSEV PDRAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIK LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKVTRKS  120
SSSPSLISLP TTSSSVLPTN YNNELLQQSS NYSMDTQVDL LTNTTNLQDH STLLLQETNT  180
FPNLFMFDPG LISISNNSLD VEQQNDDNNN GIHIPKSWKS SNEQDRQTTL LPLHPLPVCS  240
NFAAGIVSDE NYMASTSYYS DESHLNHHNM VPATEIGMDY LQRQDHELMI NDSEAWVEND  300
HQQQHGPESF LIWENFEGQI SGEGSSNMED ILSSSYPSSS SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	1e-78	MYB family protein