PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026405890.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family GRAS
Protein Properties Length: 513aa    MW: 56603.6 Da    PI: 5.9472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026405890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.82.3e-1041134961373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfse 86 
                     lv+lL+++Aea++  +++  l++ +L rl+el+sp+  ++m+RlaayfteAL++ l + ++  +k+ +  + ++ +       +++laa++l+++
  XP_026405890.1 113 LVHLLMAAAEALTGANKSreLVKVILVRLKELVSPTNgTNMERLAAYFTEALQSLLEGAGHVHSKQHHGGTHHSISgiqnlhPTDVLAAFQLLQD 207
                     68**********987665459***********9987669******************966666666555555544466677789999999***** PP

            GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                     +sP++kf+h+taNqaIleav++++rvHiiD+di++G+QW++L+qaL sR++gpp  +lRiT++++ ++g  s  +++etg+rL  fA+++g+pf+
  XP_026405890.1 208 MSPYVKFGHFTANQAILEAVKHDRRVHIIDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALARGNTGrkSIGTVQETGRRLIAFAASIGLPFS 302
                     **************************************************776556*********998888999********************* PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfd 269
                     f+    +  e++++++L++ +gEal++n++l+  ++       ++   ++L+  ksl+Pk+v++ve+e+  ++e    F+ rf+++l++ysa+fd
  XP_026405890.1 303 FHQCRLDPDESFRPSNLKLVKGEALIINCMLHFPHFS---CREPNSVASFLSGAKSLNPKLVTLVEEEIGGSDEyggGFVGRFMDSLHHYSAVFD 394
                     ***9999************************998887...444444558*******************6665544449***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWk 363
                     slea++p ++++r+ vE+++lg++i   +a   +   e++ +   W +++  aGF+ v +s ++ +q klll  ++ dgyrvee  ++ +vlgWk
  XP_026405890.1 395 SLEAGFPLQNRARALVEKVFLGPRIAGRLAGIYRT--EQEGEECCWGDWMVGAGFSGVGISFFNHCQSKLLLGLFN-DGYRVEELhNNKIVLGWK 486
                     ***************************99976665..77777799*******************************.******87478888**** PP

            GRAS 364 drpLvsvSaW 373
                     +r+L+s+S W
  XP_026405890.1 487 SRRLISASLW 496
                     ********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MAMAMEVDFS DFDFSGYSTT STTTTTEDDV TCNWNDSSPV IDWDVFSGDT HDFRGVIESM  60
MSDPNELNHI VHGDHHEYSS DSLSFGEPAE MIQNHDSVTT SNTSTDDSNG LRLVHLLMAA  120
AEALTGANKS RELVKVILVR LKELVSPTNG TNMERLAAYF TEALQSLLEG AGHVHSKQHH  180
GGTHHSISGI QNLHPTDVLA AFQLLQDMSP YVKFGHFTAN QAILEAVKHD RRVHIIDYDI  240
MEGIQWASLM QALVSRKDGP PTPHLRITAL ARGNTGRKSI GTVQETGRRL IAFAASIGLP  300
FSFHQCRLDP DESFRPSNLK LVKGEALIIN CMLHFPHFSC REPNSVASFL SGAKSLNPKL  360
VTLVEEEIGG SDEYGGGFVG RFMDSLHHYS AVFDSLEAGF PLQNRARALV EKVFLGPRIA  420
GRLAGIYRTE QEGEECCWGD WMVGAGFSGV GISFFNHCQS KLLLGLFNDG YRVEELHNNK  480
IVLGWKSRRL ISASLWSYHQ TSPLTSSDSD VSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-162GRAS family protein