PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026405423.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 399aa MW: 44190 Da PI: 7.5595

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026405423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.8e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_026405423.1 16 KGPWTPEEDQKLLAYIEEHGHGSWRSLPSKAGLQRCGKSCRLRWTNYL 63 79********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_026405423.1 69 RGKFSLQEEQSIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MTGRSAACCE KVGLKKGPWT PEEDQKLLAY IEEHGHGSWR SLPSKAGLQR CGKSCRLRWT 60 NYLRPDIKRG KFSLQEEQSI IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK 120 LGIDPVTHKP KNATLSSIDG PSKNESNLSH MAQWESTRLE AEARLVRDSK LRSHSSFKIQ 180 LTQLGSSSSA AYQAGPKWHG TMWSSKSNKV SAGRDDSPTS TMTFPDQNLS LPAALAVGLS 240 DHHTASNNEF IGAGSSSSHE RSAVLAVKEE RNEEELKSIG KSSHFLNIPD IVLFPNAYHH 300 EGTQWKYDHA SKSAGDVGNH APMVEDDNVN LPAAGNNNFI NGFTELIINH DPHNTTTSSS 360 SDNGEWTDDN GYGQEISKYY WNNILDLVNS SPSDAPPVF

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MTGRSAACCE KVGLKKGPWT PEEDQKLLAY IEEHGHGSWR SLPSKAGLQR CGKSCRLRWT  60
NYLRPDIKRG KFSLQEEQSI IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLAK  120
LGIDPVTHKP KNATLSSIDG PSKNESNLSH MAQWESTRLE AEARLVRDSK LRSHSSFKIQ  180
LTQLGSSSSA AYQAGPKWHG TMWSSKSNKV SAGRDDSPTS TMTFPDQNLS LPAALAVGLS  240
DHHTASNNEF IGAGSSSSHE RSAVLAVKEE RNEEELKSIG KSSHFLNIPD IVLFPNAYHH  300
EGTQWKYDHA SKSAGDVGNH APMVEDDNVN LPAAGNNNFI NGFTELIINH DPHNTTTSSS  360
SDNGEWTDDN GYGQEISKYY WNNILDLVNS SPSDAPPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	1e-108	MYB family protein