PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026403555.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HB-PHD

Protein Properties

Length: 740aa MW: 84511.3 Da PI: 10.0127

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026403555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	513	559	7	53
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + ++ +e+L ++F+++ p ++ +e +k+lg+ ++++ WF+N R+ XP_026403555.1 513 IPPDAVEVLRKVFAETELPPKDVKENVSKQLGIASEKISKWFKNTRY 559 457899***************************************97 PP
2	PHD	32.8	1.6e-11	227	282	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l ++++p + w+C+ C++k XP_026403555.1 227 ICAKCKLreAFPDNDIILCDgTCDCAFHQKCLDPPLATQNIPPDdqGWFCKFCECK 282 588898854455******56***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MESTRRKVRR QVSGKTRRDV ASKMAISADD GGTRYYDKVY NPNRRSQART IGSILSKKKR 60 RGSKISNNGS RKKPQIRRKV MQKFSDTDSS DKPLSSIFRR RKSSTSRRDT DGNLGNQKYA 120 RRRKRNRMKE NREQDETVRL QRRTKYLIIK MKLEQNLIDA YSGEGWNGQS REKIKPEREL 180 QRAKKQILKC KLGIRDAIHQ LHLLGSKGCI EQSALAPDGS VFHEHIICAK CKLREAFPDN 240 DIILCDGTCD CAFHQKCLDP PLATQNIPPD DQGWFCKFCE CKMEIIEAVN AHLGTHFSTS 300 SNWQDVFEEA AVEPDENASL NPEDEWPSDE SDDDDYDPER NEMSCSINGM GTKDDKADEA 360 SSSSSFLWTS DEEANLQSRS LLENDGSPEG GFYQSKHRGK NSDKINLSKM IDNKISDGST 420 DLEIRSRRRQ RRDVDYRKLH DEMFGKDLVE NEQVSEDEDW GPCRQRRRLN GSDIAGTLVS 480 LFGDEDKHSD GNPTKPKKKL RRVPDEKRTL FRIPPDAVEV LRKVFAETEL PPKDVKENVS 540 KQLGIASEKI SKWFKNTRYM ALKIRKEANE SNAAAGSNRT TDLAASKAKA SLLSSDNEEA 600 KLTKFSGNGR RRKNMESLTI SPAKRRRRSR TAGAWPTSIN EVNTLLNSPS RFKKKSTINL 660 KREQVVEDNI IPKYEQLNST KIELLYSAEM ERLCSLQAKL EEMKKVLIGI HKGRSTATKE 720 TNHAEQLVVY VPVAEVRVKR

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MESTRRKVRR QVSGKTRRDV ASKMAISADD GGTRYYDKVY NPNRRSQART IGSILSKKKR  60
RGSKISNNGS RKKPQIRRKV MQKFSDTDSS DKPLSSIFRR RKSSTSRRDT DGNLGNQKYA  120
RRRKRNRMKE NREQDETVRL QRRTKYLIIK MKLEQNLIDA YSGEGWNGQS REKIKPEREL  180
QRAKKQILKC KLGIRDAIHQ LHLLGSKGCI EQSALAPDGS VFHEHIICAK CKLREAFPDN  240
DIILCDGTCD CAFHQKCLDP PLATQNIPPD DQGWFCKFCE CKMEIIEAVN AHLGTHFSTS  300
SNWQDVFEEA AVEPDENASL NPEDEWPSDE SDDDDYDPER NEMSCSINGM GTKDDKADEA  360
SSSSSFLWTS DEEANLQSRS LLENDGSPEG GFYQSKHRGK NSDKINLSKM IDNKISDGST  420
DLEIRSRRRQ RRDVDYRKLH DEMFGKDLVE NEQVSEDEDW GPCRQRRRLN GSDIAGTLVS  480
LFGDEDKHSD GNPTKPKKKL RRVPDEKRTL FRIPPDAVEV LRKVFAETEL PPKDVKENVS  540
KQLGIASEKI SKWFKNTRYM ALKIRKEANE SNAAAGSNRT TDLAASKAKA SLLSSDNEEA  600
KLTKFSGNGR RRKNMESLTI SPAKRRRRSR TAGAWPTSIN EVNTLLNSPS RFKKKSTINL  660
KREQVVEDNI IPKYEQLNST KIELLYSAEM ERLCSLQAKL EEMKKVLIGI HKGRSTATKE  720
TNHAEQLVVY VPVAEVRVKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	61	KKKRR
2	57	83	KKKRRGSKISNNGSRKKPQIRRKVMQK
3	58	84	KKKRRGSKISNNGSRKKPQIRRKVMQK
4	122	152	RRKRNRMKENREQDETVRLQRRTKYLIIKMK
5	495	501	KPKKKLR
6	610	628	RRRKNMESLTISPAKRRRR
7	611	629	RRRKNMESLTISPAKRRRR
8	625	655	RRKRNRMKENREQDETVRLQRRTKYLIIKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-128	HB-PHD family protein