PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026401709.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 917aa MW: 103180 Da PI: 8.7311

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026401709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.5e-09	346	367	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+f+a+ G+C+ Gd+C+F+H XP_026401709.1 346 QRLCKFYAA-GYCRNGDSCRFSH 367 68*9999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MAYTDLILEY EYKILKLSRL IIHRKYWISY LFFWNAMTES VRRRSSKWDL KEDPDHFPTE 60 IRQGSGWSGR ESRSEWKVSK GLNSHDPKWS SMEARSVSRN EGNSRWSSSL EPTSRNRGIE 120 IYEFDKRDYN DMSRTMALDG DRSYSLSMSP GLDGWREKNR SRSPKGGWSR SHRSRSRSPP 180 HGYRRDLEGS NGGRRSGSHI CGEFAEERSI RGNSHRFLHQ DIQDTYEHNG RRHPGRSPGR 240 GGSKHEKGGI RNAYTEEQMD RPRDKISRGY EDVYHRDLEK SEILRSNNIS SDRPCIDFLE 300 GNCRKGSSCR YPHHGAPSEG RGIRVRDLDR KETTVFYGHD NKRESQRLCK FYAAGYCRNG 360 DSCRFSHEGA ARGSPEGRSR DDRRGHDLDH ENRLQGGSKW SDKQPADSAY DGPDARSVTE 420 KLVHHLSDEN RSWGGPKWSD ITDSHSAGNE RRSSRGSKWS DRDAVPEEKS NVWGNDNVGE 480 KIGVVDPRSK ERSFNSQQSH LDNASRTWGG PSRDDKPIDF ALHKSPQWIS DNSGGSMGFE 540 EPKGSGKFLA SESMISTRDI EQYSLPINDS RGHNQDSQSH ITNEMSIKIG KPDATQEVSA 600 QPLSSFNMNI QSQTVLPTQP FNMNGGTQQQ SSNPYSRTLP QHVEPIKKSD LVDPRLMLQQ 660 VTSGTSMMQN VSSNETVAQL TNLSASLAQI FGNGQHLPQL YAALNPSTSG LVSSHPIEPT 720 QVIALQPLIQ LNQTTPCEKQ YDPINDSIDQ TDVAGGGSQS PMKSIVPSST AADPSGGDPP 780 KISSLEEKVN ASNELKQPEK VMDKKEETVQ IDADGDGDGD NQGDEEGKKS KDPKGMRVFK 840 FALVQFVKEI LKPTWKEGQM SKEAHKTIVK KVVDKVTSTI QAAQIPQTQE KTDQYLSYSK 900 PKLTKLVQAY VEKHSKT

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MAYTDLILEY EYKILKLSRL IIHRKYWISY LFFWNAMTES VRRRSSKWDL KEDPDHFPTE  60
IRQGSGWSGR ESRSEWKVSK GLNSHDPKWS SMEARSVSRN EGNSRWSSSL EPTSRNRGIE  120
IYEFDKRDYN DMSRTMALDG DRSYSLSMSP GLDGWREKNR SRSPKGGWSR SHRSRSRSPP  180
HGYRRDLEGS NGGRRSGSHI CGEFAEERSI RGNSHRFLHQ DIQDTYEHNG RRHPGRSPGR  240
GGSKHEKGGI RNAYTEEQMD RPRDKISRGY EDVYHRDLEK SEILRSNNIS SDRPCIDFLE  300
GNCRKGSSCR YPHHGAPSEG RGIRVRDLDR KETTVFYGHD NKRESQRLCK FYAAGYCRNG  360
DSCRFSHEGA ARGSPEGRSR DDRRGHDLDH ENRLQGGSKW SDKQPADSAY DGPDARSVTE  420
KLVHHLSDEN RSWGGPKWSD ITDSHSAGNE RRSSRGSKWS DRDAVPEEKS NVWGNDNVGE  480
KIGVVDPRSK ERSFNSQQSH LDNASRTWGG PSRDDKPIDF ALHKSPQWIS DNSGGSMGFE  540
EPKGSGKFLA SESMISTRDI EQYSLPINDS RGHNQDSQSH ITNEMSIKIG KPDATQEVSA  600
QPLSSFNMNI QSQTVLPTQP FNMNGGTQQQ SSNPYSRTLP QHVEPIKKSD LVDPRLMLQQ  660
VTSGTSMMQN VSSNETVAQL TNLSASLAQI FGNGQHLPQL YAALNPSTSG LVSSHPIEPT  720
QVIALQPLIQ LNQTTPCEKQ YDPINDSIDQ TDVAGGGSQS PMKSIVPSST AADPSGGDPP  780
KISSLEEKVN ASNELKQPEK VMDKKEETVQ IDADGDGDGD NQGDEEGKKS KDPKGMRVFK  840
FALVQFVKEI LKPTWKEGQM SKEAHKTIVK KVVDKVTSTI QAAQIPQTQE KTDQYLSYSK  900
PKLTKLVQAY VEKHSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-14	C3H family protein