PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026397746.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HB-PHD

Protein Properties

Length: 1398aa MW: 153424 Da PI: 5.8562

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026397746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.8	1.3e-11	1030	1073	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++L e+ ++n yp+ e++e+LA++lgLt rqV WF N R + XP_026397746.1 1030 QRLFEALKENEYPTPEAKEKLAEELGLTVRQVNKWFNNTRWSLR 1073 556666679******************************97665 PP
2	PHD	39.5	1.2e-13	547	602	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C + fH+kCl+++l +ee+p g wlC+ C++k XP_026397746.1 547 FCAKCGSkeLSTDNDIILCDGfCTRGFHQKCLDPPLLNEEIPPGdeGWLCPACDCK 602 6999977777****88****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1398 aa Download sequence
MDVTSPIQEN CLIEKRPGTK QEVGDQTHEF SFGNGQTEAV DSSSSTKENG LRMDNLSSLN 60 ILEQKHDCGS EDVHHDTNSS QTKENGLKIT STILEQSILN QKIESRVGEE QTAAIEFTFT 120 KQSSSLEQIV LDKKEKSTIE DSQVTVVDVT IPPIKSSSSQ QNILEQKQES DFQVVQSEAI 180 DVACPTQENS LTINTKENVT GDVQCDTNSS RTKENGLVTT NSSLEQSILD QKDETGVGNE 240 QTAAIDLTLP ARENGTLQCS SIKQSILDQK QESTAEDVKI MSDVTLPTQE NSSLVKSSGH 300 EQNILEQKQE SGFEAVQHEA IDIASPILED SLRIKNPSPD QNLVEQKLEP DNGDGQSETP 360 PSKFAGHGIG ENELLETPNL SKNVEVSEPK RHGGSPNSKK KKHAVRSALS SPRVLRSRLR 420 DTSKAPDPVV VSENINTEVA KTRKKRKRTN KTLDNVFEKT KKRVRYLLNK TNYEHSLIEA 480 YSGDGWKGLS AEKVRPEKEL QRATAEILRC KLKIRDMFQH IESLCDEGKF QESLFDSDGE 540 IDSEDIFCAK CGSKELSTDN DIILCDGFCT RGFHQKCLDP PLLNEEIPPG DEGWLCPACD 600 CKADCIDLLN DNLGTDLSIE DNWEKVFPEA ATTTAGNKLE DYLGLPSDDS EDDDYDPDRL 660 DLDEQKDEEG SSSDESDCSS ASDDAEDLPQ KDPYLGLPSD DSDDDDYNPD AMDVDEQVNK 720 DESSSSGFSS DSGDSAPLSD DGKGSLGGDE VRMPSSVDGP NPLHGSDHQG PKKIKGKKET 780 IHPELRSILE QGDASPVSGK RNRKQFDYKK LHDETYGNVS SDSSDDEDWV NADGVGEGKN 840 SGGGNESVLS PKENSRTSRS GSNSKTTKNS SKKKENDQER THQKLDFENA KNIVSVSLKE 900 GKEPDLSKKR APASKRRGKA VAQETHVSSD SREHEDLVDA DGMWNKKDVH GKESVLSSNE 960 NFKTPGSGEK TKNASTLKRK SDYKEKISAK KLKFGGAKNT AFGSGNQSLE ADSIEKRASA 1020 ATKLGKAVAQ RLFEALKENE YPTPEAKEKL AEELGLTVRQ VNKWFNNTRW SLRHASGKKD 1080 KASPSKIKLV QANGKNSDTE QSNLPNSDAI TNVMPDQEPG SAAIDNAGKR DKASPSKNKL 1140 AQTNRKTGKG KQKNVLGSNA VSNVKQEREL GSAVNGKAAK RDNKASPSKN KLAQTNGNGA 1200 KAKEKKIPGR VAVSKATQEQ DPGSPINNKA VATENSLSSK LRRNKRRKSD VEDKTLTEMQ 1260 TPGRSSQRNT KQEATRTQEV QTPANHKHLQ EEVAKETPPR RSSQRNTKQE ATQKQEVQTP 1320 VKPSRPAGPS KSPTPPRRSS QRNTKQDATQ TQEVQTPAKP NKPTGSSKSQ TPTRRSSRNT 1380 KQEVTQTQVR TRSRRSIG

Sequence ? help Back to Top

Protein Sequence Length: 1398 aa Download sequence

MDVTSPIQEN CLIEKRPGTK QEVGDQTHEF SFGNGQTEAV DSSSSTKENG LRMDNLSSLN  60
ILEQKHDCGS EDVHHDTNSS QTKENGLKIT STILEQSILN QKIESRVGEE QTAAIEFTFT  120
KQSSSLEQIV LDKKEKSTIE DSQVTVVDVT IPPIKSSSSQ QNILEQKQES DFQVVQSEAI  180
DVACPTQENS LTINTKENVT GDVQCDTNSS RTKENGLVTT NSSLEQSILD QKDETGVGNE  240
QTAAIDLTLP ARENGTLQCS SIKQSILDQK QESTAEDVKI MSDVTLPTQE NSSLVKSSGH  300
EQNILEQKQE SGFEAVQHEA IDIASPILED SLRIKNPSPD QNLVEQKLEP DNGDGQSETP  360
PSKFAGHGIG ENELLETPNL SKNVEVSEPK RHGGSPNSKK KKHAVRSALS SPRVLRSRLR  420
DTSKAPDPVV VSENINTEVA KTRKKRKRTN KTLDNVFEKT KKRVRYLLNK TNYEHSLIEA  480
YSGDGWKGLS AEKVRPEKEL QRATAEILRC KLKIRDMFQH IESLCDEGKF QESLFDSDGE  540
IDSEDIFCAK CGSKELSTDN DIILCDGFCT RGFHQKCLDP PLLNEEIPPG DEGWLCPACD  600
CKADCIDLLN DNLGTDLSIE DNWEKVFPEA ATTTAGNKLE DYLGLPSDDS EDDDYDPDRL  660
DLDEQKDEEG SSSDESDCSS ASDDAEDLPQ KDPYLGLPSD DSDDDDYNPD AMDVDEQVNK  720
DESSSSGFSS DSGDSAPLSD DGKGSLGGDE VRMPSSVDGP NPLHGSDHQG PKKIKGKKET  780
IHPELRSILE QGDASPVSGK RNRKQFDYKK LHDETYGNVS SDSSDDEDWV NADGVGEGKN  840
SGGGNESVLS PKENSRTSRS GSNSKTTKNS SKKKENDQER THQKLDFENA KNIVSVSLKE  900
GKEPDLSKKR APASKRRGKA VAQETHVSSD SREHEDLVDA DGMWNKKDVH GKESVLSSNE  960
NFKTPGSGEK TKNASTLKRK SDYKEKISAK KLKFGGAKNT AFGSGNQSLE ADSIEKRASA  1020
ATKLGKAVAQ RLFEALKENE YPTPEAKEKL AEELGLTVRQ VNKWFNNTRW SLRHASGKKD  1080
KASPSKIKLV QANGKNSDTE QSNLPNSDAI TNVMPDQEPG SAAIDNAGKR DKASPSKNKL  1140
AQTNRKTGKG KQKNVLGSNA VSNVKQEREL GSAVNGKAAK RDNKASPSKN KLAQTNGNGA  1200
KAKEKKIPGR VAVSKATQEQ DPGSPINNKA VATENSLSSK LRRNKRRKSD VEDKTLTEMQ  1260
TPGRSSQRNT KQEATRTQEV QTPANHKHLQ EEVAKETPPR RSSQRNTKQE ATQKQEVQTP  1320
VKPSRPAGPS KSPTPPRRSS QRNTKQDATQ TQEVQTPAKP NKPTGSSKSQ TPTRRSSRNT  1380
KQEVTQTQVR TRSRRSIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	443	448	RKKRKR
2	444	449	KKRKRT
3	978	993	KRKSDYKEKISAKKLK
4	1300	1306	RRSSQRN
5	1337	1343	RRSSQRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-89	HB-PHD family protein