PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026392639.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 485aa MW: 53270.2 Da PI: 5.411

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026392639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++v+++G g+W+++ + g+ R++k+c++rw ++l XP_026392639.1 30 KGPWTATEDSILIEYVNKHGEGNWNAVQKNSGLSRCGKSCRLRWANHL 77 79******************************************9986 PP
2	Myb_DNA-binding	48.9	1.6e-15	83	126	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+++++ +lG++ W++ a+ ++ gRt++++k++w++ XP_026392639.1 83 KGSFTPDEERLILELHSKLGNK-WARMAAQLP-GRTDNEIKNYWNT 126 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MMTNNKHSNS TALSDDASSG GGGGGVALKK GPWTATEDSI LIEYVNKHGE GNWNAVQKNS 60 GLSRCGKSCR LRWANHLRPN LKKGSFTPDE ERLILELHSK LGNKWARMAA QLPGRTDNEI 120 KNYWNTRVKR RQRAGLPLYP NDIHKQGTAT FHHNQSYLSQ PPHNLSNFSS SQQQKQNFGT 180 PLSLFEPLNL SSATSYPAQQ NTAHFISTPV NGFKRFRGDN NYGFAHSYSN STSLFNQNLS 240 SQLLPPPSIQ FNLGNYDLNQ QKTIMQNQYD STRTLAPDFS TKLELPSNQL SQPASDAEYQ 300 INDSLSIRSN SGLLDALIQE AQAMGNGEDM KREGLSSEQE DKCKNHDDAL VGDVPSSNGT 360 PPLGSLGGQE WNDSSPNHSS VGEKRKQPTD IELNSAVEED DDLSNLLDIM PSAMLVSDFY 420 NDGGEISNGQ SSGVTDEDTG LDTQQLPSTI NTTTTNTTNT TTTNTTMSMS HDWTTGGWNN 480 LPEMC

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MMTNNKHSNS TALSDDASSG GGGGGVALKK GPWTATEDSI LIEYVNKHGE GNWNAVQKNS  60
GLSRCGKSCR LRWANHLRPN LKKGSFTPDE ERLILELHSK LGNKWARMAA QLPGRTDNEI  120
KNYWNTRVKR RQRAGLPLYP NDIHKQGTAT FHHNQSYLSQ PPHNLSNFSS SQQQKQNFGT  180
PLSLFEPLNL SSATSYPAQQ NTAHFISTPV NGFKRFRGDN NYGFAHSYSN STSLFNQNLS  240
SQLLPPPSIQ FNLGNYDLNQ QKTIMQNQYD STRTLAPDFS TKLELPSNQL SQPASDAEYQ  300
INDSLSIRSN SGLLDALIQE AQAMGNGEDM KREGLSSEQE DKCKNHDDAL VGDVPSSNGT  360
PPLGSLGGQE WNDSSPNHSS VGEKRKQPTD IELNSAVEED DDLSNLLDIM PSAMLVSDFY  420
NDGGEISNGQ SSGVTDEDTG LDTQQLPSTI NTTTTNTTNT TTTNTTMSMS HDWTTGGWNN  480
LPEMC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-73	MYB family protein