PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026392537.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79590.2 Da    PI: 6.074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026392537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2055110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_026392537.1  55 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 110
                     688999***********************************************999 PP
2START208.72.2e-652464672206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la  a++el+++++++ep+Wv  +    e++ +de++++f+++ +      ++ea+r s+ v+m++++lve+l+d + +W+  +     +a t+e
  XP_026392537.1 246 LAVGAMEELIRMVQLGEPLWVAGPdgatEILSEDEYMRTFPRGIGpkpfgLKTEASRQSADVIMNHMNLVEILMDAG-RWSSLFSsivsRAVTVE 339
                     78899*************************************999********************************.77777777777****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+++fvRy++q+++ +w++vdvS+++  +   s++v R++++pSg+li++++ng skv+wvehv+
  XP_026392537.1 340 VLSTGvagnfnGALQVMTAEFQVPSPLVPtRESLFVRYCKQHSDNTWAVVDVSLEHLHPS--SPPVSRCRRRPSGCLIQEMPNGCSKVVWVEHVE 432
                     ********************************************************9875..79******************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+++rslv+s l +gak+w atl+rqce+
  XP_026392537.1 433 VDDRAVHSIYRSLVNSALGFGAKRWIATLDRQCER 467
                     *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    
MFDHTQHNPL DMMSDNDLAR ISNTVDEFDS KSGSEYLEGG SGDDQADPTT QRAKKKRYHR  60
HTQHQIQEME AFFKECPHPD DKQRKELGRE LGLEPLQVKF WFQNKRTQMK TQHERHENTQ  120
LRMENDKLRA ENMRYKEALS NASCPNCGGP TSLGEMSFDE HHLRIENARL REEIDRILAI  180
AAKYVGKPMG SSFPLLPPPI PSRSSLDLGV GIQGGIRGDI VGGGGDLLRS LSGALTEADK  240
PVIIELAVGA MEELIRMVQL GEPLWVAGPD GATEILSEDE YMRTFPRGIG PKPFGLKTEA  300
SRQSADVIMN HMNLVEILMD AGRWSSLFSS IVSRAVTVEV LSTGVAGNFN GALQVMTAEF  360
QVPSPLVPTR ESLFVRYCKQ HSDNTWAVVD VSLEHLHPSS PPVSRCRRRP SGCLIQEMPN  420
GCSKVVWVEH VEVDDRAVHS IYRSLVNSAL GFGAKRWIAT LDRQCERLAS VMASTTFLAD  480
PVINNQEGRK SMLKLSERMV MSFCSGVSAS TTHTWTTLSG SGAEDVRVMT RKSVDDPGRP  540
PGIVLNAATS FWLPVPPKRI FDFLRDENSR KEWDILSNGG DVQEMAHIAN GRDPGNCVSL  600
LRVHGVHSAN SSPNNMLILQ ESCTNATGSF VIYAPVDIAA MNAVLNGEDP DYVALLPSGF  660
AILPDGPTVH GGGTAAVESG GSLLTVAFQI LVDSIPTAKL SLGSVATVNS LISCTVERIK  720
AAVNSDSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein