PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386708.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

RAV

Protein Properties

Length: 379aa MW: 42233.7 Da PI: 9.0883

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.7	1.4e-13	62	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_026386708.1 62 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEQEAAKAYDIAAQRFRG 110 78**9888.8*****3.....5******99***********98 PP
2	B3	103.5	1.1e-32	196	295	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae++ g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v+F+++ +++ XP_026386708.1 196 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqTGTTSKGVLLNFEDNGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDIVMFMRSTGGDKH 290 89*************************97788899************************************************87657776 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_026386708.1 291 LFIDF 295 76665 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDSGGSCIDE TSSDHSANSI SVSPLTVLLT PEKLCRVGSG SSVVLDLETG VDQAESRKLP 60 SSQYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEQEAAKA YDIAAQRFRG RDAITNFKPL 120 LDGNEDDDIE AAFLNSHSKA EIVDMLRKHT YNDELDQSKR NFGDGSCHGK INRSGIYMGL 180 TPGSMGQGMG AREQLFEKAV TPSDVGKLNR LVIPKQHAEK NFPLQTGTTS KGVLLNFEDN 240 GGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLKAGDIVM FMRSTGGDKH LFIDFKSRTG 300 SSSIQQQPIY PVHHQQPAVQ VVRLFGVNIF KMPNIAVSGL VENNNNHHTW IGNKRIREVD 360 LLQTRDCCKK QHIIFAGAL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDSGGSCIDE TSSDHSANSI SVSPLTVLLT PEKLCRVGSG SSVVLDLETG VDQAESRKLP  60
SSQYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEQEAAKA YDIAAQRFRG RDAITNFKPL  120
LDGNEDDDIE AAFLNSHSKA EIVDMLRKHT YNDELDQSKR NFGDGSCHGK INRSGIYMGL  180
TPGSMGQGMG AREQLFEKAV TPSDVGKLNR LVIPKQHAEK NFPLQTGTTS KGVLLNFEDN  240
GGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KGLKAGDIVM FMRSTGGDKH LFIDFKSRTG  300
SSSIQQQPIY PVHHQQPAVQ VVRLFGVNIF KMPNIAVSGL VENNNNHHTW IGNKRIREVD  360
LLQTRDCCKK QHIIFAGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-137	RAV family protein