PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026385461.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

RAV

Protein Properties

Length: 372aa MW: 42716.1 Da PI: 8.2695

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026385461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.7	1.2e-12	53	99	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV w + +g+W A+I+ + +r+++g+f ++ +Aaka++ a+ kl+ XP_026385461.1 53 RFKGVVWQP-NGKWGAQIYS------NhQRIWIGTFKSESDAAKAYDSAAVKLR 99 69*****.8**999......44******88********9998 PP
2	B3	86.1	2.9e-27	177	273	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ +++l + d++ + W+++++y+k+s++yv+t+GW++Fvk+++Lk +D+v+F XP_026385461.1 177 FQKELTPSDVGKLNRLVIPKKYAVTYfpkvseapleeedGGV-IDDIQLPFVDRDMKLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKKNDVVTF 270 99**********************9988888776665333.3778999999999************************************* PP EE- CS B3 83 kld 85 ++ XP_026385461.1 271 YRC 273 943 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MEEEMMLSMV PYTALNAAVG GEGSDSNRSN SNSPRGLSNK RHRQQDGIKP SARFKGVVWQ 60 PNGKWGAQIY SNHQRIWIGT FKSESDAAKA YDSAAVKLRS GDSHRNIPVT AQTSLEPDFQ 120 KPYSIDEVLI MLKDGAYETK LHEFMNSSEK QDRESGFGVN LFRGNANDGS IKCQQLFQKE 180 LTPSDVGKLN RLVIPKKYAV TYFPKVSEAP LEEEDGGVID DIQLPFVDRD MKLWKFRYCY 240 WKSSQSYVFT RGWNRFVKDK KLKKNDVVTF YRCECREWSQ NKPFYLIDVA SNGDEDNRLD 300 LQLGFSRNTI ETGPSDRTIK LWQNKEEVIM KVTPPQQQPD EEKRPLIMEV APPQQQPDDE 360 KKAFRLFGVN IN

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MEEEMMLSMV PYTALNAAVG GEGSDSNRSN SNSPRGLSNK RHRQQDGIKP SARFKGVVWQ  60
PNGKWGAQIY SNHQRIWIGT FKSESDAAKA YDSAAVKLRS GDSHRNIPVT AQTSLEPDFQ  120
KPYSIDEVLI MLKDGAYETK LHEFMNSSEK QDRESGFGVN LFRGNANDGS IKCQQLFQKE  180
LTPSDVGKLN RLVIPKKYAV TYFPKVSEAP LEEEDGGVID DIQLPFVDRD MKLWKFRYCY  240
WKSSQSYVFT RGWNRFVKDK KLKKNDVVTF YRCECREWSQ NKPFYLIDVA SNGDEDNRLD  300
LQLGFSRNTI ETGPSDRTIK LWQNKEEVIM KVTPPQQQPD EEKRPLIMEV APPQQQPDDE  360
KKAFRLFGVN IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-80	RAV family protein