PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026385351.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LBD

Protein Properties

Length: 290aa MW: 33052.3 Da PI: 4.7169

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026385351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.2	3.6e-11	109	213	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkf..anvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aC +C +l +kC+ dC++ + f a +++f ++ l G + vl ++l + ++ +++++l +e +ar++dPvyG +g+il+l ++ + XP_026385351.1 109 ACPSCTYLPQKCKVDCPFVRFFEACVSRDFirEFYTVLCGSTAVLPDHSNLqsadEWNKAGITAEALEFENKARVHDPVYGTTGIILSLYKNWWN 203 6*******************88776666446788899999998655555211233345899**************************9999 PP DUF260 90 lkaelallke 99 l++++ ll++ XP_026385351.1 204 LNHHVRLLEQ 213 9988887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MFRRVSYIQL FSTYFDVPRF QIGYAASTAD RQKIEARITD STRTFEVNAG VNEPLFGAIG 60 VLLALHQLMG EEVNRFETIT GEGVNVTPAG TMNHFVLKDS EKIEQQHRAC PSCTYLPQKC 120 KVDCPFVRFF EACVSRDFIR EFYTVLCGST AVLPDHSNLQ SADEWNKAGI TAEALEFENK 180 ARVHDPVYGT TGIILSLYKN WWNLNHHVRL LEQRDRSVQN FPTVQIGSCN IPTDKGKGIV 240 TPESTNECST IAEWMDMEDD DESLYSREEV LKNYMEFQQE VALIQPLPQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	3e-08	LBD family protein