PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996354.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 373aa MW: 41342.1 Da PI: 6.4023

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.8	4.5e-08	8	41	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 + +C+ ++ +++lfC+ ++ +lC +C ++H XP_024996354.1 8 MAVCDSCKTSPASLFCRADSAFLCITCDGKIHAA 41 568**************************99954 PP
2	zf-B_box	24.9	4.1e-08	51	93	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C +H+ H++ XP_024996354.1 51 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHER 93 689*****************************65777777776 PP
3	CCT	70.2	5.1e-24	306	349	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_024996354.1 306 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 349 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MAKESWTMAV CDSCKTSPAS LFCRADSAFL CITCDGKIHA ANKLASRHAR VWMCEVCEQA 60 PASVTCKADA AALCVTCDRD IHSANPLARR HERFPVVPFY DPATTVSKLG GGGGNSDHHY 120 LLDFDVNVAG TEAEEAEAAS WLLPTPNPNL NKIADGSDDD NNVKVTESES GYLFNEIDPY 180 IDIDLKTPNQ KPNQILHRYN SPTDGVVPVQ NKNNNQHYQI PPHGHVSSDV VEGLPAYDID 240 YTGSKPFMYN FTSQTISQSV SSSSLEIEVG VVPDHKAAMA DVSNNHHHHH QSSAEVYPSP 300 VMGFDREARV LRYKEKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE IDVEADDAFI 360 SPDYSSYGVV PSF

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MAKESWTMAV CDSCKTSPAS LFCRADSAFL CITCDGKIHA ANKLASRHAR VWMCEVCEQA  60
PASVTCKADA AALCVTCDRD IHSANPLARR HERFPVVPFY DPATTVSKLG GGGGNSDHHY  120
LLDFDVNVAG TEAEEAEAAS WLLPTPNPNL NKIADGSDDD NNVKVTESES GYLFNEIDPY  180
IDIDLKTPNQ KPNQILHRYN SPTDGVVPVQ NKNNNQHYQI PPHGHVSSDV VEGLPAYDID  240
YTGSKPFMYN FTSQTISQSV SSSSLEIEVG VVPDHKAAMA DVSNNHHHHH QSSAEVYPSP  300
VMGFDREARV LRYKEKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE IDVEADDAFI  360
SPDYSSYGVV PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-96	CO-like family protein