PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994203.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 427aa MW: 46584 Da PI: 7.8823

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.4e-40	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++akeyhr+h+vCe hsk+ +v+v gl +rfCqqCsrfh+lsefD +krsCrrrL++hn+rrrk+q+ XP_024994203.1 182 RCQVEGCNLDLTSAKEYHRKHRVCESHSKSLKVVVGGLDRRFCQQCSRFHSLSEFDGKKRSCRRRLSDHNARRRKPQQ 259 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MLQTTVIDMD WNTKWDWENL DLFSSKGVAS PKKLQSPDWG IKEGEDIDVS FNLSGVVGGS 60 GGSASDVGNN SSAKSSISAS TESSFKDGMK VSNFPFEGAG GFPDAFSKEF TGGELNGTSP 120 SLEASVCSSD QSIGLKLGKR TYFENSFARG NTKTCSSPNI PASSVSTVKK LKLSCQSTPI 180 PRCQVEGCNL DLTSAKEYHR KHRVCESHSK SLKVVVGGLD RRFCQQCSRF HSLSEFDGKK 240 RSCRRRLSDH NARRRKPQQE TIQFNSTSPS SSFYDGQQQL SFVFNNVPLV QTKPGGSSIW 300 ESTCNSKPLV ATVKAEKLGG HDGLTHSVGQ FPNAVNMPSL AVNGIMPSKG ATANVFDQVE 360 SVDVGRALSL LSNNWWGSSC EPDFMHTTNM GLPFEYWQQV DQESHSILKP WNGIQYGNPM 420 DEILKPL

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MLQTTVIDMD WNTKWDWENL DLFSSKGVAS PKKLQSPDWG IKEGEDIDVS FNLSGVVGGS  60
GGSASDVGNN SSAKSSISAS TESSFKDGMK VSNFPFEGAG GFPDAFSKEF TGGELNGTSP  120
SLEASVCSSD QSIGLKLGKR TYFENSFARG NTKTCSSPNI PASSVSTVKK LKLSCQSTPI  180
PRCQVEGCNL DLTSAKEYHR KHRVCESHSK SLKVVVGGLD RRFCQQCSRF HSLSEFDGKK  240
RSCRRRLSDH NARRRKPQQE TIQFNSTSPS SSFYDGQQQL SFVFNNVPLV QTKPGGSSIW  300
ESTCNSKPLV ATVKAEKLGG HDGLTHSVGQ FPNAVNMPSL AVNGIMPSKG ATANVFDQVE  360
SVDVGRALSL LSNNWWGSSC EPDFMHTTNM GLPFEYWQQV DQESHSILKP WNGIQYGNPM  420
DEILKPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	256	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	8e-58	SBP family protein