PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992699.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 876aa    MW: 96915 Da    PI: 6.4186
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_024992699.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_024992699.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp118.55.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv+++++++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_024992699.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLARFVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    
MKLSAVGFGQ QLPEGEKRCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAASTNKE  60
VDAHTPNYPS LPPQLVCQLH NVTMHADGET DEVYAQMTLQ PLNSEEQKEA FLPADLGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL ARFVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSQFP LRLKRPWPPG LPSFNGIKED DLGMNSPIMW LRGDPGDRGI QSLNFQGVGV  420
SPWLQPRLDA SMLGMQTDIY QAMAAAALQE MRTMDSAKPS NPSLLQFQQH RTVPTGSATL  480
VPPQMMHQSQ PQPTFENLPV SHPQPHLLPQ QLQHQIPFNN EQQHLLPSMP QFGSSSQTIS  540
SMQHPSFSGS NGNPVSGSNV SSFQSLLGSF SHDETSHLLN MPRSTSLLTS TGWPAKRVAV  600
DPLLVSGASQ SLLHQVEQLG PPSHTNLPRN TNLSQTAVSL PPFPGRECSI DQESSNDSQS  660
HLLFGVNIDN SNLLMQSGIS NLRGVGNDSD SMTLPFTSSN YNMSNAGNEF SMNPTMTPSS  720
CIDESGFLHS PENTSQTNPP TRTFVKVYKS GCYGRSLDIA KFSSYHELRS ELAQMFGLEG  780
QLEDPLRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM GKQGLELLNS  840
VQIPNPTDST YDNYTPSRQE SMNLSNGVAS VGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein